Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H17
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.7  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   2.7  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    27   4.7  

>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/53 (22%), Positives = 30/53 (56%)
 Frame = -1

Query: 467 LIKCTKSWRIVVRPCIAVNVSIHIRLKSQKTSDFNLSTETLAQHLTGNTTQRV 309
           L +C+++W++  R  + +  ++  +  SQ TS+F      ++    G+++Q+V
Sbjct: 578 LKECSQTWKLAQRSIVLIENTLKGKTNSQSTSEF---VSPISDTENGSSSQQV 627


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 358 DKLKSDVFWDFNRMCIETFTAIHGRTTMRHDL 453
           DK+  D  W   R  +E    IH R  M  DL
Sbjct: 742 DKIPVDEMWRLFRQILEALAYIHSRGMMHRDL 773


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 334 RCWARVSVDKLKSDVFWDFNRMCIETFTAIHGRTTMRHDLV 456
           R   +  + +L+SD +  F +  +ET++A+H  +++   LV
Sbjct: 601 RLLLKKEIGQLESDDYIQFEKEFLETYSALHNTSSLLPGLV 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,680,095
Number of Sequences: 5004
Number of extensions: 77345
Number of successful extensions: 171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)