Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H17
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872...    30   2.8  
02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606     29   3.7  
01_01_0687 - 5262849-5262870,5262935-5263094,5263197-5263318,526...    28   8.6  
01_01_0620 - 4621291-4621379,4621722-4621803,4622238-4622282,462...    28   8.6  
01_01_0556 + 4090432-4090500,4091414-4092030,4092408-4092533,409...    28   8.6  

>02_05_1305 -
           35586499-35586601,35586963-35587034,35587111-35587232,
           35587767-35587826,35587919-35587997,35588219-35588307,
           35588405-35588492,35591761-35591821,35592546-35592890,
           35593094-35594351
          Length = 758

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 620 NHCRGTDKARAVITSGIGGQSLGSLH-RVRTRRKKTQQYHRTKHVXALARRPSYK 781
           N CR  D+ RA++   IG   L     + R R+K   Q++++K    +A + S++
Sbjct: 559 NACRDDDELRAILGDSIGNPELMKQRIQERVRKKGRAQFNKSKTGSIVAFKVSFR 613


>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
          Length = 873

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 352 SVDKLKSDVFWDFNRMC 402
           ++D LK D+FWDF ++C
Sbjct: 361 TLDGLKDDIFWDFFKLC 377


>01_01_0687 -
           5262849-5262870,5262935-5263094,5263197-5263318,
           5263415-5263536,5263908-5264028,5264076-5264152,
           5264650-5264671,5264777-5265102
          Length = 323

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 575 LLYCKIYSAIIWLFGNHCRGTDKARAVITSGIGGQSL 685
           LL   +   ++ L G+ C G  + RAVI +GI G  L
Sbjct: 88  LLLAGVPGLVLCLCGSGCFGISEGRAVIKAGIEGMML 124


>01_01_0620 -
           4621291-4621379,4621722-4621803,4622238-4622282,
           4623701-4623892,4625224-4625337,4625430-4625561,
           4626356-4626440,4626526-4626605,4626791-4627034,
           4627376-4627617,4628232-4628315,4628427-4628601,
           4629351-4629464,4630025-4630236
          Length = 629

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 779 CTRVFSLKPXRVSCDDTVAFSCDACELDGGFQATARRYRWLSRHEPYQ 636
           C+++ +L       DD +  S D   +D  F  T    RW S+HE  Q
Sbjct: 304 CSKLSTLNEDEPMGDDNLRESMD---IDSSFSETTNGRRWRSQHEQLQ 348


>01_01_0556 +
           4090432-4090500,4091414-4092030,4092408-4092533,
           4092619-4092895,4093021-4093251
          Length = 439

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 694 PSSSHASQENATVSSHETRXGFSEKTLVQENSNGARIXHGPRNDG-GQRETSXTRNNPLA 870
           PS+SH    N     H+TR   ++   V E+S  A      RN    +R+    + NPL 
Sbjct: 58  PSTSHQDNHNNLDELHQTRGPLNDVPHVPESSASATPASISRNASFARRDQGHRQPNPLN 117

Query: 871 S 873
           S
Sbjct: 118 S 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,907,758
Number of Sequences: 37544
Number of extensions: 497859
Number of successful extensions: 1273
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)