Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H17
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.92 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.92 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.8  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 703 NSMEASKRLPA-DTAGYHGTSLISSTAVIAEQPY 605
           NS   +K  P     GY G +L+  + V  +QPY
Sbjct: 76  NSTSENKTFPTIKIVGYKGRALVVVSCVTKDQPY 109


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 703 NSMEASKRLPA-DTAGYHGTSLISSTAVIAEQPY 605
           NS   +K  P     GY G +L+  + V  +QPY
Sbjct: 76  NSTSENKTFPTIKIVGYKGRALVVVSCVTKDQPY 109


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
 Frame = -3

Query: 423 YSGERFNTHSIKVPKNVRFQFINRNSGPTSHREHD-TAGVWLRAISCSLRIAFQTG-TSA 250
           Y   +  TH    P  V+   + R+ GP S  + D +   + R      R++F     S 
Sbjct: 48  YENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRDSRLSFLGPIKSL 107

Query: 249 ALSVGLL----HP*TYF 211
           +LS+ +L     P TYF
Sbjct: 108 SLSIKMLERIWRPDTYF 124


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 398 CVLKRSPLYTGALLCATI 451
           C+LK  PL+TG  + + I
Sbjct: 39  CILKPKPLWTGKQISSLI 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,361
Number of Sequences: 438
Number of extensions: 5490
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)