Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H16
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U20864-8|AAC46665.2| 330|Caenorhabditis elegans Peroxisome asse... 32 0.31
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr... 30 1.3
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein. 30 1.3
AL117202-22|CAB57900.1| 691|Caenorhabditis elegans Hypothetical... 29 2.2
U70856-1|AAB09165.1| 327|Caenorhabditis elegans Hypothetical pr... 28 3.9
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 28 3.9
>U20864-8|AAC46665.2| 330|Caenorhabditis elegans Peroxisome
assembly factor protein13 protein.
Length = 330
Score = 31.9 bits (69), Expect = 0.31
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 279 WMLR*QNFLLVLINLKPKAYXNSARIRPGKTQP 377
W+ R +LLV++ LKP +Y ++A + G +QP
Sbjct: 148 WVYRFWRWLLVMLKLKPASYASAAEMAWGTSQP 180
>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical protein
C10C5.6b protein.
Length = 1782
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 26 MKSVVLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKESG--VSTEVINAAKTGQYS 199
+++ + L + N N H + ++ A + S+CV +S V E+I A + +
Sbjct: 822 VRAAAVFALGSLLRNSSRSNEHASAVEENLAGELCSQCVFDSSVLVREELIVALQWFVFD 881
Query: 200 EDKAFKKFVLCFFNK 244
+K F KF+L N+
Sbjct: 882 FEKRFVKFLLELSNQ 896
>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical protein
C10C5.6a protein.
Length = 1776
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 26 MKSVVLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKESG--VSTEVINAAKTGQYS 199
+++ + L + N N H + ++ A + S+CV +S V E+I A + +
Sbjct: 822 VRAAAVFALGSLLRNSSRSNEHASAVEENLAGELCSQCVFDSSVLVREELIVALQWFVFD 881
Query: 200 EDKAFKKFVLCFFNK 244
+K F KF+L N+
Sbjct: 882 FEKRFVKFLLELSNQ 896
>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical protein
C10C5.6b protein.
Length = 1782
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 26 MKSVVLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKESG--VSTEVINAAKTGQYS 199
+++ + L + N N H + ++ A + S+CV +S V E+I A + +
Sbjct: 822 VRAAAVFALGSLLRNSSRSNEHASAVEENLAGELCSQCVFDSSVLVREELIVALQWFVFD 881
Query: 200 EDKAFKKFVLCFFNK 244
+K F KF+L N+
Sbjct: 882 FEKRFVKFLLELSNQ 896
>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical protein
C10C5.6a protein.
Length = 1776
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 26 MKSVVLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKESG--VSTEVINAAKTGQYS 199
+++ + L + N N H + ++ A + S+CV +S V E+I A + +
Sbjct: 822 VRAAAVFALGSLLRNSSRSNEHASAVEENLAGELCSQCVFDSSVLVREELIVALQWFVFD 881
Query: 200 EDKAFKKFVLCFFNK 244
+K F KF+L N+
Sbjct: 882 FEKRFVKFLLELSNQ 896
>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
Length = 1800
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 26 MKSVVLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKESG--VSTEVINAAKTGQYS 199
+++ + L + N N H + ++ A + S+CV +S V E+I A + +
Sbjct: 846 VRAAAVFALGSLLRNSSRSNEHASAVEENLAGELCSQCVFDSSVLVREELIVALQWFVFD 905
Query: 200 EDKAFKKFVLCFFNK 244
+K F KF+L N+
Sbjct: 906 FEKRFVKFLLELSNQ 920
>AL117202-22|CAB57900.1| 691|Caenorhabditis elegans Hypothetical
protein Y47D3A.28 protein.
Length = 691
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 89 HLTETQ-KEKAKQYTSECVKESGVSTEVINAAK-TGQYSEDKAFKK 220
HLT + +EK + +T+ CV+ V N K T Q++ + KK
Sbjct: 574 HLTGMEEREKVETFTTTCVEVKNVKVVTCNQCKYTSQFASSECIKK 619
>U70856-1|AAB09165.1| 327|Caenorhabditis elegans Hypothetical
protein F57F4.2 protein.
Length = 327
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 229 KHEFLKSFIFGVLSSLRCIYHF 164
K+EFLKS I L +L C+ HF
Sbjct: 231 KNEFLKSHIHSKLRNLMCMLHF 252
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 134 ECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAIL 256
+CV SGV E + A+T S F KF+ F++++ L
Sbjct: 203 DCVVTSGVLLEAMGNARTTHNSNSSRFGKFIRIEFDENSKL 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,145,716
Number of Sequences: 27780
Number of extensions: 203378
Number of successful extensions: 570
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -