Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H14
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    27   3.3  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    27   4.4  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.4  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   4.4  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   5.8  
SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha...    26   7.6  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   7.6  

>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 620 AREQRCIKKICANCSIVKNICLSFSETDE 534
           A     IK++C + +  +N+C S S  DE
Sbjct: 180 ANRSPLIKELCESANSTENVCFSVSTVDE 208


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 20  AKFIACVSHQNRYKALVCLTCLQIIFNS 103
           +KFI CVS  +R K +      QI FNS
Sbjct: 108 SKFIVCVSQSSRIKLITEEEFKQICFNS 135


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 223 SLLKDKSFISIFVCCTYNRKLLSKTQLYVIILY 125
           S L D      ++ CT +  LLSK+ LY + LY
Sbjct: 253 STLLDNDLEEGWIACTTDTVLLSKSSLYDLALY 285


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 597 FDATLLSCRSVHMQNISKNMQYISKEDRKITLDPYTM 707
           FD    + +S+  Q +  N+QY+ KED +  L+ Y M
Sbjct: 285 FDERFTNTKSIMSQVLGHNLQYMYKEDDE-NLESYFM 320


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 201  LYQYSSVAHIIGNCYLKHSST*LFCMNTPYNTQLLKIICKQV--RHTSALYRF 49
            L +  ++   +G  +++     L   NTPY  +LLK++  QV  RH    Y F
Sbjct: 913  LLESEAIPPKVGEEFIQEGLRLLSNPNTPYYLKLLKVLFGQVPDRHKDFTYDF 965


>SPCC1020.07 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 462 CSEYACTKKQIQHELWRCLRTVSSSVSIL 376
           C EY   +++ Q ELWR  + +   +++L
Sbjct: 67  CEEYIALQRETQAELWRHTKPLPGVMNLL 95


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 292 YQCVSVIQYLNTIVIIVNI 348
           Y CVS ++ L+T+V+ VN+
Sbjct: 295 YDCVSFLKLLDTLVLSVNV 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,490
Number of Sequences: 5004
Number of extensions: 64822
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)