Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H14
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0715 - 5193648-5193897,5193987-5194255,5195011-5195350,519...    29   6.1  
03_05_0692 + 26800698-26800704,26802174-26802304,26802747-268028...    29   6.1  

>06_01_0715 - 5193648-5193897,5193987-5194255,5195011-5195350,
            5195691-5195845,5196547-5196557,5197632-5197689,
            5197855-5198004,5198074-5198169,5198398-5198818,
            5198835-5198950,5199041-5199149,5199483-5199532,
            5200936-5201004,5201366-5201459,5201550-5201820,
            5202273-5202607,5202718-5202786,5202834-5202904
          Length = 977

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 554  SFSETDE*LDGVKLKTSHIVQCLSSTSTRESVRSMRVLRSKFNTNC 417
            +F E     D V+   SHI   L + + R+S    R+LR KF   C
Sbjct: 888  TFQEIARSKDTVRQYESHIAFTLPALAIRQSDSDHRILRWKFTREC 933


>03_05_0692 +
           26800698-26800704,26802174-26802304,26802747-26802899,
           26803025-26803092,26803739-26803745,26803931-26804038,
           26804749-26804919,26805007-26805090
          Length = 242

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 579 AVRADFFDATLLSCRSVHMQNISKNMQYISKEDRKITLDPYTMK 710
           A+  D+FDATL S RS+    I K  + +    + + L P  MK
Sbjct: 159 ALELDYFDATLYSNRSLCYLQIGKAQKALLDAKKCVKLRPKWMK 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,325,203
Number of Sequences: 37544
Number of extensions: 330699
Number of successful extensions: 523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)