Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H14
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical ...    36   0.036
U29612-3|AAA68802.2|  289|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    28   9.5  
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    28   9.5  

>AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical
           protein T10B11.6 protein.
          Length = 325

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +3

Query: 648 KNMQYISKEDRKITLDPYTMK-TNNPIQRPLCVMMNWMLXKPKHVLKYANVYLXQDFDVV 824
           K M ++SK  + +T+D   +  +++  ++P+ +M+ W    PKH+ KY  VY  + + VV
Sbjct: 41  KMMIHLSKS-QDVTVDSIVLSDSHHDEKKPVILMVGWAGANPKHIDKYIKVYNDEGYRVV 99


>U29612-3|AAA68802.2|  289|Caenorhabditis elegans Hypothetical
           protein C09B8.4 protein.
          Length = 289

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 708 KTNNPIQRPLCVMMNWMLXKPKHVLKYANVYLXQDFDV 821
           K N    +P+ +M+ W     KH+ KY+ +Y  + +DV
Sbjct: 47  KANASTSKPVVLMIGWAGAANKHMEKYSKLYNDKGYDV 84


>U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical
           protein F30B5.6 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +2

Query: 11  RYVAKFIACVSHQNRYKALVCL----TCLQIIFNSCVLYGVFIQNNYVELCFR*QFPIIC 178
           R++A +     H N +K L+C      CL I F+  +++G    NN +++      P++C
Sbjct: 106 RFIAIYFQISYHNNSHKTLLCAISVNLCLLIFFDQYMMFGYC--NNVIDV------PLVC 157

Query: 179 ATDEY*YKTFIF 214
              +  Y    F
Sbjct: 158 DNSKCAYNQCYF 169


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 832 IRPTTSKSCXR*TLAYFSTCLGFXSIQFIITHSGL*IGLFVFIV 701
           IR  TSK     TLA F++ L   S+   +TH+   +G+F+ ++
Sbjct: 832 IREATSKGVGPVTLAAFTSFLAGASMLPALTHAFYQVGVFLVVI 875


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 832 IRPTTSKSCXR*TLAYFSTCLGFXSIQFIITHSGL*IGLFVFIV 701
           IR  TSK     TLA F++ L   S+   +TH+   +G+F+ ++
Sbjct: 832 IREATSKGVGPVTLAAFTSFLAGASMLPALTHAFYQVGVFLVVI 875


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,628,952
Number of Sequences: 27780
Number of extensions: 361551
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)