Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H14
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.50 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.0  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    23   2.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   2.6  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   6.1  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   6.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 126 MNTPYNTQLLKIICKQVRHTSALYR 52
           +N   + Q++  +CK +  TSALYR
Sbjct: 15  INVLLHGQVICFVCKDITSTSALYR 39


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 241 THVCFQSLLKD 209
           THVCF SLL+D
Sbjct: 390 THVCFFSLLRD 400


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 561 NVFNNGAVRADFFDATLLSCRSVHMQNISKNMQYISKEDRKITL 692
           +VF+    +   FD+TLL C    ++N+   +   + +    TL
Sbjct: 17  DVFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDAEAYTL 60


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 561 NVFNNGAVRADFFDATLLSCRSVHMQNISKNMQYISKEDRKITL 692
           +VF+    +   FD+TLL C    ++N+   +   + +    TL
Sbjct: 33  DVFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDAEAYTL 76


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -2

Query: 614 EQRCIKKICANCSIVK--NICLSFSE 543
           ++  IKK+ A CS++   NI + F++
Sbjct: 93  DENVIKKLVAECSVISDANIYIRFNK 118


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -2

Query: 614 EQRCIKKICANCSIVK--NICLSFSE 543
           ++  IKK+ A CS++   NI + F++
Sbjct: 93  DENVIKKLVAECSVISDANIYIRFNK 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,780
Number of Sequences: 438
Number of extensions: 4312
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)