Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H12
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.8  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   6.8  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    24   9.0  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 164  VTCQN*QLSIPVIAQ*ILIMSSDLFYFLSILKSSND 57
            ++CQ   L +PV  Q I +  S L YF+++  S+ D
Sbjct: 3840 MSCQLLMLFLPVCEQFINLAESVLDYFINVHNSNLD 3875


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 260 QKYVKRFGKGVFLLSFRNT*ILSKFCTEK 346
           QK +  FGK +F LS ++  ILS    +K
Sbjct: 493 QKDISAFGKDIFELSAQSERILSNLAEKK 521


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 290 VFLLSFRNT*ILSKFCTEKYI 352
           VFLLS  N  IL K C  KY+
Sbjct: 90  VFLLSILNNTILLKSCLGKYM 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,337,285
Number of Sequences: 5004
Number of extensions: 22884
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)