Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H12
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0452 + 18349012-18349279,18349415-18349674,18356444-183565...    27   8.8  

>07_03_0452 +
           18349012-18349279,18349415-18349674,18356444-18356510,
           18356785-18356804,18356996-18357060,18359225-18359308,
           18359911-18359970,18360172-18360215,18360403-18360491
          Length = 318

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 7   ICMTCEMVNFFLETSYQSL 63
           ICMT  MV FF+E S+++L
Sbjct: 296 ICMTSGMVIFFVECSFKNL 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,314,098
Number of Sequences: 37544
Number of extensions: 109517
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)