Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H09
         (896 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.5  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   3.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   4.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.7  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    22   7.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +2

Query: 242 FISRYILKNANI---YGDNCDFTVMKKRK 319
           F  R I KNA     YG+NC+  +  +RK
Sbjct: 211 FFRRSITKNAVYQCKYGNNCEIDMYMRRK 239


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 672 MQYRPQLPIHIHNDLRSFVPPTLGVQPS 755
           + Y P  P++ H+  R    P  GV P+
Sbjct: 160 LHYPPPPPVYTHHYARYHPYPNFGVPPA 187


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 479 NIMQMNNIPFSTSLTAPAENNMPVWELQQPNITGVQESPFR 601
           N++   ++PF          N+ V +L   NIT V +  FR
Sbjct: 204 NLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITSVAKQFFR 244


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 356  VPIKPKSVPAPAGNKMP 406
            VP+K  +VP P+G+  P
Sbjct: 1104 VPLKGTAVPPPSGSSGP 1120


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 687 EVGIAFVRGADVGSLATLV 631
           ++ I  +RGA++G L TL+
Sbjct: 112 QLWIKQIRGAELGGLGTLI 130


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 296  FTVMKKRKANSNLIRVTNNI 355
            F +  K+K ++  I+V+NN+
Sbjct: 1524 FVIEHKKKTSTEWIQVSNNV 1543


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 561 NSPISQEYKRVPSDFS*IRHP 623
           ++P+S   K+ PS F+   HP
Sbjct: 349 HNPMSHHLKQEPSGFTSSNHP 369


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,588
Number of Sequences: 336
Number of extensions: 4590
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)