Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H09
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 32 0.13
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 31 0.17
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 30 0.51
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 29 1.2
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M... 27 4.8
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 26 6.3
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 6.3
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 6.3
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 26 8.4
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 26 8.4
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 8.4
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 31.9 bits (69), Expect = 0.13
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Frame = +2
Query: 314 RKANSNLIRVTNNIVPIKPKSVPAPAGNKMPI-WEPRQPNAEKTHMQAQTSAISNP---N 481
R +SN TN+I+ P +PA + +PI P +EK Q T ++++
Sbjct: 143 RSFSSNSSSDTNSILYAGPTFTHSPAASNLPIPTFLHSPVSEKAEWQPPTGSVNSNMPFQ 202
Query: 482 IMQMNNIPFSTSLTAPAENNMPVWELQQPNITGVQES 592
Q +++P + S A N P+ P++ +Q++
Sbjct: 203 FHQSSSVPSTPSEVAMGHNFCPM-SRNDPSLQSIQQT 238
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 31.5 bits (68), Expect = 0.17
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Frame = -1
Query: 737 CGRDKRSQVVVYVNRQLRSVLHLFVGRMLEVWQHWCCLGVSDSAEVGRDSLVLL*---YW 567
CG ++ Q+ V + + V F+GR +E Q C GV SA + V++ W
Sbjct: 169 CGDGRKGQLGPVVMKTVNKVS--FLGR-IEHAQAVVC-GVQFSAVLQETGHVIVLGGEKW 224
Query: 566 AVEAPTPAYCSLQVQSNLLRKGYCSSA*YWDLISLRSELACVFFRHSVDEAPKS-ASCSQ 390
V A A+ Q ++ L CS + W +SL S CV+ D A K+ S
Sbjct: 225 NVAAECDAW---QANNSELSSSICSISANWSTLSLLSTEGCVYAFGRCDRAQKAHTKASD 281
Query: 389 LVQ 381
+VQ
Sbjct: 282 IVQ 284
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.9 bits (64), Expect = 0.51
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 416 PRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAPAENN 541
PR+ E T + +S I++P +Q + PF S+ A NN
Sbjct: 670 PRKNTEESTSSSSFSSLITSPASLQYDENPFKQSVVAELNNN 711
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +1
Query: 442 THASSDLSDIKSQYYADEQYPFLNKFDCTCREQYAGVGASTAQYHRSTRESLPTSAESDT 621
T + +D I S Y +D++ +KF+ ++ A +G + + + ESL T A D
Sbjct: 770 TTSLNDADIILSDYISDQK----SKFESKQQDLIANIGKIVSNFLQEQNESLYTKA--DI 823
Query: 622 PKQHQCCQTSNIRPTNK 672
H SNIR N+
Sbjct: 824 LHSHLNDTNSNIRKANE 840
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +2
Query: 647 LPTSAPRTNAIPTSVAYSHTQRPEIFCPAHTWSSAITKXRIYTAAATVTDNTNY 808
LP++ A P++ HTQ P+ +H + ATV +N Y
Sbjct: 173 LPSTHANPVAAPSTATTQHTQLPKTSAVSHQKPHEAPSTAVKAPTATVAENEPY 226
>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 155
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 359 PIKPKSVPAPAG-NKMPIWEPRQPNAEKTHMQA--QTSAISNPNIMQMNNIPFSTSLTA 526
P P+S PA PI PR+ + TH+ A T+ + N+ + P+S + TA
Sbjct: 62 PTSPQSAYVPATVYTSPIGSPRRGSVRYTHVMAHPNTTTTVSENLPEEVPPPYSPAATA 120
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -2
Query: 367 LYRYNIICNSYEVRICFAFFHYCEITVVTVNICVLQDIPTNKEILSIL 224
LY + + E+R+ +CE V T +I D P K ++++
Sbjct: 654 LYDLRTLYSEIEIRVSDPVARFCETAVDTSSIKCFSDTPNKKNRITMV 701
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -1
Query: 656 MLEVWQHWCCLGVSDSAEVGRDSLVLL 576
+LE WQ W L D +G + LL
Sbjct: 572 LLEAWQEWKILNAKDDTRIGTTNSNLL 598
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 647 VWQHWCCLGVSDSAEV 600
VWQH C+G +D +EV
Sbjct: 76 VWQHGNCVGFADESEV 91
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 381 GTLLGFIGTILFVTLMRLEFALRFFITVKSQLSP*IFAFFKIYLLIKK 238
G L GF G F + + +L SP +F++F IY+ IKK
Sbjct: 539 GILHGFAG--YFEATLYKDISLSIMPATMEAKSPDMFSWFPIYMPIKK 584
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 512 TSLTAPAENNMPVWELQQPNITGV 583
T L+A +N + +W+L+ PN G+
Sbjct: 126 TFLSASLDNTIRLWDLRSPNCQGL 149
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 359 PIKPKSVPAPAGN--KMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAP 529
P P+S PA + N +P W+ QP Q SA+ N++ N PF +AP
Sbjct: 444 PAAPQSAPALSMNPSSLPPWQ--QPT--------QQSAVQPSNLVPSQNAPFIPGTSAP 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,491,511
Number of Sequences: 5004
Number of extensions: 73383
Number of successful extensions: 238
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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