Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H09
(896 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800 34 0.13
12_02_1175 + 26702744-26704507 30 2.2
06_03_0986 - 26574083-26574952 30 2.9
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 27 3.4
07_03_0229 + 15506772-15508304 29 3.8
07_03_1601 - 28047764-28047845,28048043-28048078,28048209-280483... 29 5.0
07_03_1600 - 28024495-28024509,28024681-28024731,28025083-280253... 29 5.0
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 29 5.0
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 29 6.6
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897... 29 6.6
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 29 6.6
04_01_0244 - 3194141-3195091,3195301-3195312 29 6.6
08_02_1273 - 25771214-25771636,25771691-25772119 28 8.8
08_02_0164 - 13480939-13481340,13481507-13481770,13482929-134831... 28 8.8
>09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800
Length = 363
Score = 34.3 bits (75), Expect = 0.13
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 615 RHPQTTPMLPNFQHPPHEQMQYRPQLPIHI 704
RHP T M+P F PHEQ+Q+R P+H+
Sbjct: 198 RHPGTPQMVPVF---PHEQIQWRHPTPVHM 224
>12_02_1175 + 26702744-26704507
Length = 587
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 683 SVLHLFVGRMLEVWQHWCCLGVSDSAEV 600
S L L+ G +L VW CC SD EV
Sbjct: 262 SFLSLYAGYVLLVWTSHCCANASDELEV 289
>06_03_0986 - 26574083-26574952
Length = 289
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = +2
Query: 323 NSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNI 502
N ++++++N +VP + P P +P+ P P + + + + P +M I
Sbjct: 179 NISVLQISNFVVPPGVLTRPRPGPGPLPLPSPPLPRMKPMAIAPTPAPVPAPT--KMVPI 236
Query: 503 PFSTSLTAPAENN 541
P S LT PA+ +
Sbjct: 237 PPSLPLTDPADED 249
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 27.5 bits (58), Expect(2) = 3.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 368 PKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNP 478
PKS+P P MP P+ P+ E + + + S ++ P
Sbjct: 588 PKSMPPPPPKSMPPPPPKFPSNEMSRNEDRRSDLNKP 624
Score = 20.6 bits (41), Expect(2) = 3.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2
Query: 350 NIVPIKPKSVPAP 388
N++P PKS+P P
Sbjct: 550 NMLPPPPKSMPPP 562
>07_03_0229 + 15506772-15508304
Length = 510
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -1
Query: 683 SVLHLFVGRMLEVWQHW 633
SVLHLFVGR++E ++ W
Sbjct: 457 SVLHLFVGRLVEQFEWW 473
>07_03_1601 -
28047764-28047845,28048043-28048078,28048209-28048339,
28048695-28048967,28049039-28049166,28049250-28049369,
28049461-28049538,28049598-28049669,28049790-28049849,
28050096-28050217,28052918-28053048,28053382-28053534,
28053628-28053755,28053831-28053968,28054056-28054144,
28055741-28055878,28056870-28057102
Length = 703
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 654 VGSLATLVLFGGVGFS*SRKGLSCTPVILGC*SSHTGILFSAGAVKL 514
V S + V+ F+ + +CT + +GC S+T IL SA V++
Sbjct: 472 VASNMSRVVVSLASFNGEERIFACTGIFIGCDESNTRILTSASLVRI 518
>07_03_1600 -
28024495-28024509,28024681-28024731,28025083-28025355,
28025427-28025554,28025645-28025764,28025856-28025933,
28025993-28026061,28026183-28026213
Length = 254
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 654 VGSLATLVLFGGVGFS*SRKGLSCTPVILGC*SSHTGILFSAGAVKL 514
V S + V+ F + +CT + +GC S+T IL SA V++
Sbjct: 84 VASNVSRVVVSLASFKGEERIFACTGIFIGCSESNTRILTSASLVRI 130
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Frame = +2
Query: 359 PIKPKSVPAPAGNKMPIWEPR---QPNAEKTHMQAQTSA--ISNP---NIMQMNNIPFST 514
P +PK+ P PA K+ EP +P A KT +Q S+P + + NN+P S+
Sbjct: 1720 PSEPKAQPEPAEPKVKETEPSRTPEPKAPKTEEASQPGGRIFSSPLARKLAEDNNVPLSS 1779
Query: 515 SL-TAP 529
+ T P
Sbjct: 1780 VMGTGP 1785
>09_04_0088 +
14494711-14494931,14496309-14496399,14496496-14496571,
14496671-14496755,14497381-14497450,14499111-14499316,
14499434-14499508,14501043-14501133,14501400-14501441,
14501661-14501741,14502010-14502089,14502254-14502365
Length = 409
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -2
Query: 610 QLKSEGTLLYSC---DIGLLKLPHRHIVLCR-CSQTC 512
+LK+E L C DI ++ LP RH VLC CS C
Sbjct: 343 KLKNEQILCRICFERDICIVLLPCRHYVLCEACSDKC 379
>07_03_0333 -
16888606-16888740,16889463-16889570,16889691-16889790,
16890473-16890560,16890637-16893253
Length = 1015
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 776 AAATVTDNTNYTSNASQCXRNLWPSTSAMPLPHLIPSXP 892
AAA V + + +A+Q L PS S + LPHL+P+ P
Sbjct: 8 AAAAVAVSGELSISATQS--RLLPSASRVHLPHLLPAPP 44
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 618 HPQTTPMLP--NFQHPPHEQMQYRPQLPIHI-HNDLRSFVPP 734
HP P LP N PP Q Q Q P H+ H+ ++S VPP
Sbjct: 265 HPPALPALPAPNAPPPPAPQSQPPSQFPGHLPHSQVQS-VPP 305
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 314 RKANSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAIS 472
RK + +R+ + P P APA +P P P HM A SA+S
Sbjct: 196 RKTTTAPVRI--QLAPRNPPPPAAPAAPPVPPAVPAAPAPAPVHMSAPASALS 246
>08_02_1273 - 25771214-25771636,25771691-25772119
Length = 283
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 649 KFGNIGVVWGCRIQLKSEGTLLYSCDIGLLKL 554
K G + V WG + K+EGTL +CD GL +
Sbjct: 29 KTGQLTVFWG---RNKNEGTLRETCDTGLYNI 57
>08_02_0164 -
13480939-13481340,13481507-13481770,13482929-13483107,
13483453-13483462
Length = 284
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 782 ATVTDNTNYTSNASQCXRNLWPSTSAMPLPHLI 880
A + N +S+A+ R++W S S P+PH I
Sbjct: 188 ARLDSNLGSSSSAANGERSIWGSISKTPVPHKI 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,338,068
Number of Sequences: 37544
Number of extensions: 467827
Number of successful extensions: 1428
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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