Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H09
(896 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.31
AF393492-1|AAL60417.1| 136|Apis mellifera odorant binding prote... 25 0.94
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 24 1.6
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 23 2.9
AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor prot... 23 2.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.8
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 3.8
AF393495-1|AAL60420.1| 136|Apis mellifera odorant binding prote... 23 3.8
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 23 5.0
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 5.0
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 5.0
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 5.0
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 5.0
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 6.6
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 6.6
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 22 8.7
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 26.6 bits (56), Expect = 0.31
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +1
Query: 40 MPFLDMFXFFT----TDSPCKSKIYKILNXNNPQTITKTPWI-VIXILCFLWILVIKRNN 204
+P L F FT T S C + + ++ +PQT PW+ + I +LV++R N
Sbjct: 300 VPLLGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAPWVRRVFIHVLPRLLVMRRYN 359
Query: 205 S 207
+
Sbjct: 360 T 360
>AF393492-1|AAL60417.1| 136|Apis mellifera odorant binding protein
ASP4 protein.
Length = 136
Score = 25.0 bits (52), Expect = 0.94
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 448 ASSDLSDIKSQYYADEQYPFLNKFDC 525
A DLSD+KS Y A+ + + KF C
Sbjct: 30 AGFDLSDLKSMYEANSEEQ-MKKFGC 54
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 24.2 bits (50), Expect = 1.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 551 TPAYCSLQVQSNLLRKGYCSSA*YWDLISLRSEL 450
TP Y + +V +L KG+ SA YW L L EL
Sbjct: 528 TPEYVAPEV---ILNKGHDISADYWSLGVLMFEL 558
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 23.4 bits (48), Expect = 2.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = +2
Query: 242 FISRYILKNANI---YGDNCDFTVMKKRK 319
F R I KNA YG+NC+ + +RK
Sbjct: 210 FFRRSITKNAVYQCKYGNNCEIDMYMRRK 238
>AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor
protein.
Length = 72
Score = 23.4 bits (48), Expect = 2.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = +2
Query: 242 FISRYILKNANI---YGDNCDFTVMKKRK 319
F R I KNA YG+NC+ + +RK
Sbjct: 7 FFRRSITKNAVYQCKYGNNCEIDMYMRRK 35
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 418 RLPNRHLVPSWCRNTF 371
R P+R+++PSW + F
Sbjct: 284 RTPDRYVMPSWIKMLF 299
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 418 RLPNRHLVPSWCRNTF 371
R P+R+++PSW + F
Sbjct: 284 RTPDRYVMPSWIKMLF 299
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 418 RLPNRHLVPSWCRNTF 371
R P+R+++PSW + F
Sbjct: 284 RTPDRYVMPSWIKMLF 299
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 418 RLPNRHLVPSWCRNTF 371
R P+R+++PSW + F
Sbjct: 284 RTPDRYVMPSWIKMLF 299
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 418 RLPNRHLVPSWCRNTF 371
R P+R+++PSW + F
Sbjct: 284 RTPDRYVMPSWIKMLF 299
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 418 RLPNRHLVPSWCRNTF 371
R P+R+++PSW + F
Sbjct: 284 RTPDRYVMPSWIKMLF 299
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 3.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 418 RLPNRHLVPSWCRNTF 371
R P+R+++PSW + F
Sbjct: 352 RTPDRYVMPSWIKMLF 367
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 3.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 418 RLPNRHLVPSWCRNTF 371
R P+R+++PSW + F
Sbjct: 352 RTPDRYVMPSWIKMLF 367
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 23.0 bits (47), Expect = 3.8
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -3
Query: 192 NNQYPQKTQNXNYNPRC 142
NN Y N NYN C
Sbjct: 335 NNNYNNNNYNNNYNNNC 351
>AF393495-1|AAL60420.1| 136|Apis mellifera odorant binding protein
ASP4 protein.
Length = 136
Score = 23.0 bits (47), Expect = 3.8
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +1
Query: 448 ASSDLSDIKSQY--YADEQYPFLNKFDCTCREQYAGVGASTAQYHR---STRESLPTSAE 612
A DLSD+KS Y ++EQ L F+ ++ + +T + TRE P
Sbjct: 30 AGFDLSDLKSMYESNSEEQMKKLGCFEACVFQKLHFMDGNTLNVEKLESGTRELTPDDFT 89
Query: 613 SDTPKQHQCC 642
D + + C
Sbjct: 90 EDVHEIIEQC 99
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 22.6 bits (46), Expect = 5.0
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -3
Query: 192 NNQYPQKTQNXNYNPRC 142
NN Y N NYN C
Sbjct: 93 NNNYKYNYNNNNYNNNC 109
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 5.0
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -3
Query: 192 NNQYPQKTQNXNYNPRC 142
NN Y N NYN C
Sbjct: 93 NNNYKYNYNNNNYNNNC 109
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 5.0
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -3
Query: 192 NNQYPQKTQNXNYNPRC 142
NN Y N NYN C
Sbjct: 93 NNNYKYNYNNNNYNNNC 109
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 5.0
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -3
Query: 192 NNQYPQKTQNXNYNPRC 142
NN Y N NYN C
Sbjct: 93 NNNYKYNYNNNNYNNNC 109
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.6 bits (46), Expect = 5.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 375 LLGFIGTILFVTLMRLE 325
L+GFIG + F+ L LE
Sbjct: 877 LIGFIGNLTFLPLRSLE 893
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 204 IVSFNNQYPQKTQNXNYNPRCFCY 133
I+S NN Y K N NYN + Y
Sbjct: 303 IISSNN-YNYKNYNNNYNSKKLYY 325
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 204 IVSFNNQYPQKTQNXNYNPRCFCY 133
I+S NN Y K N NYN + Y
Sbjct: 314 IISSNN-YNYKNYNNNYNSKKLYY 336
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.8 bits (44), Expect = 8.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 671 NAIPTSVAYSHTQRPEI 721
NA+ T +A +H Q P+I
Sbjct: 368 NALQTVLAQNHPQHPDI 384
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,048
Number of Sequences: 438
Number of extensions: 5209
Number of successful extensions: 43
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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