Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H07
(930 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 330 1e-91
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 69 7e-13
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 66 9e-12
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 64 2e-11
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 62 8e-11
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 59 1e-09
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 58 1e-09
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 56 9e-09
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 50 4e-07
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 50 6e-07
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 48 2e-06
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 43 5e-05
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 43 7e-05
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 43 7e-05
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 39 9e-04
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 39 0.001
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 36 0.011
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 29 1.2
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 29 1.2
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.6
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 27 3.8
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 27 3.8
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 5.0
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 5.0
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 27 5.0
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 8.7
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 8.7
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 8.7
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 8.7
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 330 bits (812), Expect = 1e-91
Identities = 156/267 (58%), Positives = 197/267 (73%)
Frame = +1
Query: 115 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 294
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 295 GKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPID 474
GKRRK+TV IVL+D+ D R+ D+V+I PCP +KY +R+ +LP+
Sbjct: 81 GKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLA 140
Query: 475 DSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDT 654
D+VEGLTG+LF+VYLKPYF+EAYRPI + D F+VRG MR VEFKVV+ P F IV+ DT
Sbjct: 141 DTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDT 200
Query: 655 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRG 834
+IH +GEPI RE+EE +L VGYDDIGGCR+Q+AQI+E+VELPLRHP LFK+IG+ PPRG
Sbjct: 201 IIHWEGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRG 260
Query: 835 ISCMGRLXPEKHSLARAVANETGASSF 915
I G K +ARAVANETGA F
Sbjct: 261 ILMYGPPGTGKTLMARAVANETGAFFF 287
Score = 34.7 bits (76), Expect = 0.019
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 837 LMYGPPXTGKTLIGSXXXXXNRSFFFL 917
LMYGPP TGKTL+ +FFFL
Sbjct: 262 LMYGPPGTGKTLMARAVANETGAFFFL 288
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 69.3 bits (162), Expect = 7e-13
Identities = 33/81 (40%), Positives = 48/81 (59%)
Frame = +1
Query: 667 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCM 846
D +P+ + + Y DIGG Q+ +IKE VELPL HP L++ +G+ PP+G+
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILY 231
Query: 847 GRLXPEKHSLARAVANETGAS 909
G K LA+AVAN+T A+
Sbjct: 232 GAPGTGKTLLAKAVANQTSAT 252
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 65.7 bits (153), Expect = 9e-12
Identities = 30/65 (46%), Positives = 42/65 (64%)
Frame = +1
Query: 715 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPEKHSLARAVAN 894
V Y D+GGC++Q+ +++E+VELPL P F +G+ PP+GI G K ARAVAN
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVAN 235
Query: 895 ETGAS 909
T A+
Sbjct: 236 RTDAT 240
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/60 (46%), Positives = 42/60 (70%)
Frame = +1
Query: 721 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPEKHSLARAVANET 900
Y+ +GG KQ+ +IKE++ELP++HP LF+++G+ P+GI G K LARAVA+ T
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHT 203
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 62.5 bits (145), Expect = 8e-11
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +1
Query: 709 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPEKHSLARAV 888
+AV + IGG + Q+AQI+++VELP ++P LFK + PPRG+ G K + RAV
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAV 333
Query: 889 ANETGASSF 915
A E A F
Sbjct: 334 AAEANAQVF 342
Score = 52.8 bits (121), Expect = 7e-08
Identities = 30/73 (41%), Positives = 40/73 (54%)
Frame = +1
Query: 685 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPE 864
RE E+ N V + DIGG + ++KE VE PL H F +GV PP+G+ G
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCS 594
Query: 865 KHSLARAVANETG 903
K A+A+A ETG
Sbjct: 595 KTITAKAIATETG 607
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 58.8 bits (136), Expect = 1e-09
Identities = 28/65 (43%), Positives = 38/65 (58%)
Frame = +1
Query: 715 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPEKHSLARAVAN 894
V Y D+GG Q +++E VELPL L++ IG+ PPRG+ G K L +AVAN
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 190
Query: 895 ETGAS 909
T A+
Sbjct: 191 STAAN 195
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 58.4 bits (135), Expect = 1e-09
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = +1
Query: 715 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPEKHSLARAVAN 894
+ + +GG +Q+ +++E++ELPL++P LF +G+ PP+G+ G K LARAVA
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAA 188
Query: 895 ETGAS 909
G +
Sbjct: 189 SLGVN 193
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 55.6 bits (128), Expect = 9e-09
Identities = 26/74 (35%), Positives = 41/74 (55%)
Frame = +1
Query: 682 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXP 861
K E E + + DIGG + ++ E+V +P++HP +++ G+ PPRG+ G
Sbjct: 160 KAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGC 219
Query: 862 EKHSLARAVANETG 903
K LA A+ANE G
Sbjct: 220 GKTMLANALANELG 233
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/79 (26%), Positives = 43/79 (54%)
Frame = +1
Query: 673 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGR 852
+P + E + V +++IG + +++ + P++ P L++++G+ P G+ G
Sbjct: 475 QPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGP 534
Query: 853 LXPEKHSLARAVANETGAS 909
K LA+AVANE+ A+
Sbjct: 535 PGCGKTLLAKAVANESKAN 553
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 50.4 bits (115), Expect = 4e-07
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +1
Query: 721 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPEKHSLARAVANET 900
Y DIGG KQ+ ++ E + LP++ F+ +GV PP+G G K LARA A ++
Sbjct: 184 YSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQS 243
Query: 901 GAS 909
A+
Sbjct: 244 NAT 246
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 49.6 bits (113), Expect = 6e-07
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = +1
Query: 709 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPEKHSLARAV 888
+++ ++ +GG + Q+KEMV LPL +P +F+ + PPRG+ G K +ARA+
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARAL 320
Query: 889 A 891
A
Sbjct: 321 A 321
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 48.0 bits (109), Expect = 2e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +1
Query: 661 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGIS 840
H D + I+ + + ++ IGG + Q+KEMV LPL +P +F + + PPRG+
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVL 410
Query: 841 CMGRLXPEKHSLARAVA 891
G K +AR +A
Sbjct: 411 FHGPPGTGKTLMARVLA 427
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 43.2 bits (97), Expect = 5e-05
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +1
Query: 715 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPEKHSLARAVAN 894
V +DDIGG + +++ ++LPL+ P LF G+ P G+ G K LA+AVA
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAVAT 710
Query: 895 E 897
E
Sbjct: 711 E 711
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 42.7 bits (96), Expect = 7e-05
Identities = 27/67 (40%), Positives = 35/67 (52%)
Frame = +1
Query: 715 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPEKHSLARAVAN 894
V +DDI G +KE V LP++ P LF + G P GI G K LA+AVA
Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIKLPQLF-SHGRKPWSGILLYGPPGTGKSYLAKAVAT 184
Query: 895 ETGASSF 915
E G++ F
Sbjct: 185 EAGSTFF 191
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 42.7 bits (96), Expect = 7e-05
Identities = 27/74 (36%), Positives = 39/74 (52%)
Frame = +1
Query: 694 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPEKHS 873
EE A+N V + D+ G + +++E+V+ LR P+ F +G PRG+ G K
Sbjct: 258 EERAIN-VRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 874 LARAVANETGASSF 915
LARAVA E F
Sbjct: 316 LARAVAGEANVPFF 329
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 39.1 bits (87), Expect = 9e-04
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = +1
Query: 715 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG--VXPPRGISCMGRLXPEKHSLARAV 888
V +DDIGG + + Q+ + V PL++P +F G + P+G+ G K LA+A+
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKAL 145
Query: 889 ANETGAS 909
A ++ A+
Sbjct: 146 AKQSQAT 152
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 38.7 bits (86), Expect = 0.001
Identities = 25/67 (37%), Positives = 32/67 (47%)
Frame = +1
Query: 715 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPEKHSLARAVAN 894
V +DDI G +KE V P P LF+ + P RG+ G K LARAVA
Sbjct: 456 VHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVAT 514
Query: 895 ETGASSF 915
E+ + F
Sbjct: 515 ESRSVFF 521
Score = 31.5 bits (68), Expect = 0.18
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 837 LMYGPPXTGKTLIGSXXXXXNRSFFF 914
L++GPP TGKT++ +RS FF
Sbjct: 496 LLFGPPGTGKTMLARAVATESRSVFF 521
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 35.5 bits (78), Expect = 0.011
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +1
Query: 715 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVXPPRGISCMGRLXPEKHSLARAVAN 894
V + DI G +KE V P P LF+ + P +G+ G K LARAVA
Sbjct: 376 VYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLARAVAT 434
Query: 895 ETGASSF 915
E A+ F
Sbjct: 435 EAKATFF 441
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 837 LMYGPPXTGKTLIGSXXXXXNRSFFF 914
L++GPP TGKT++ ++ FF
Sbjct: 416 LLFGPPGTGKTMLARAVATEAKATFF 441
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 837 LMYGPPXTGKTLI 875
L+YGPP TGKTLI
Sbjct: 308 LLYGPPGTGKTLI 320
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +1
Query: 136 SPDDLSTAILRRKDRPNRLIVEEAVSDDNS--VVALSQAKMEQLQLFRGDTVLLKGKRRK 309
S +D+S + RR R + + A S D++ V A S +L G+T+ K
Sbjct: 243 STEDMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWELSSGETIRQYSGHHK 302
Query: 310 ETVCIVLSD 336
VC+ L+D
Sbjct: 303 AAVCVALND 311
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 140 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 253
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -3
Query: 484 QLNHQLAVCGLV---FHISLKDTELWI 413
QLN ++ CG++ F++ LKD E W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -3
Query: 484 QLNHQLAVCGLV---FHISLKDTELWI 413
QLN ++ CG++ F++ LKD E W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 161 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKANA 304
SSV S S ++M++ + +F+ S+ +SSV T + S +N+
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNS 376
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 640 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 729
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 454 LVFHISLKDTELWIP-HQKDAHEGCFSRHGSSEFSHQG 344
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 139 PD-DLSTAILRRKDRPNRLIVEEAVSD 216
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +1
Query: 112 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 270
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 840 MYGPPXTGKTLIG-SXXXXXNRSFF 911
+ GPP GKT +G S NR FF
Sbjct: 576 LVGPPGVGKTSVGKSIASALNREFF 600
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 798 TVQGYWSEXSTRHLM-YGPPXTGKT 869
T++ + S H++ YGPP TGKT
Sbjct: 46 TLEKFISSNRVPHMLFYGPPGTGKT 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,788,803
Number of Sequences: 5004
Number of extensions: 78420
Number of successful extensions: 260
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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