Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H06
(477 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DB7305 Cluster: PREDICTED: similar to Nuclear po... 95 9e-19
UniRef50_UPI0000D5716C Cluster: PREDICTED: similar to Nuclear po... 84 2e-15
UniRef50_Q9VKJ3 Cluster: Nuclear pore complex protein Nup160 hom... 66 3e-10
UniRef50_Q17II0 Cluster: Putative uncharacterized protein; n=2; ... 57 2e-07
UniRef50_Q12769-2 Cluster: Isoform 2 of Q12769 ; n=3; Amniota|Re... 44 0.002
UniRef50_Q12769 Cluster: Nuclear pore complex protein Nup160; n=... 44 0.002
UniRef50_Q4S160 Cluster: Chromosome 13 SCAF14769, whole genome s... 38 0.15
UniRef50_Q7Q7T6 Cluster: ENSANGP00000021475; n=1; Anopheles gamb... 37 0.20
UniRef50_Q623B6 Cluster: Putative uncharacterized protein CBG019... 34 1.4
UniRef50_Q6NI16 Cluster: Putative membrane protein; n=1; Coryneb... 32 5.7
UniRef50_A6MAD9 Cluster: Gp074; n=1; Lactococcus phage KSY1|Rep:... 31 10.0
UniRef50_Q9YF02 Cluster: Translation initiation factor 2 subunit... 31 10.0
>UniRef50_UPI0000DB7305 Cluster: PREDICTED: similar to Nuclear pore
complex protein Nup160 homolog; n=1; Apis mellifera|Rep:
PREDICTED: similar to Nuclear pore complex protein
Nup160 homolog - Apis mellifera
Length = 1348
Score = 94.7 bits (225), Expect = 9e-19
Identities = 44/105 (41%), Positives = 60/105 (57%)
Frame = +2
Query: 143 LEAMPVTFKEXAPNHNIPEKWKEIVLXTGGTHSTLQDIKLPQKAGGYWYKDSTKFYTRNR 322
+E + ++E P+ +PEKW EI L TGG+ STLQDIK+P++AGGY Y D +K++TRNR
Sbjct: 1 MEEFLLGYREVVPDQTVPEKWNEIKLNTGGSQSTLQDIKVPERAGGYSYNDGSKYFTRNR 60
Query: 323 FIYWQTTSDAXXXXXXXXXXXXXXXXXRCKVAPGTPPLSNITVXE 457
FIYW+ D R K TP L I++ E
Sbjct: 61 FIYWRICHDVLELVEHSLDINLANCRVRYKFT-DTPILDGISIHE 104
>UniRef50_UPI0000D5716C Cluster: PREDICTED: similar to Nuclear pore
complex protein Nup160 homolog; n=2; Coelomata|Rep:
PREDICTED: similar to Nuclear pore complex protein
Nup160 homolog - Tribolium castaneum
Length = 1388
Score = 83.8 bits (198), Expect = 2e-15
Identities = 37/105 (35%), Positives = 59/105 (56%)
Frame = +2
Query: 143 LEAMPVTFKEXAPNHNIPEKWKEIVLXTGGTHSTLQDIKLPQKAGGYWYKDSTKFYTRNR 322
++ + + ++E P+ + + W+EI L TGGT TLQDIK+ ++A G+ Y+DST+ +TRNR
Sbjct: 1 MQEIALGYREVIPDQTVSDPWREITLNTGGTQGTLQDIKVAERANGFCYRDSTRHHTRNR 60
Query: 323 FIYWQTTSDAXXXXXXXXXXXXXXXXXRCKVAPGTPPLSNITVXE 457
FIYW+ + D R K TP L +++ E
Sbjct: 61 FIYWRISHDVLELVEHSLDINLAGNRIRYKFV-DTPILDGVSIHE 104
>UniRef50_Q9VKJ3 Cluster: Nuclear pore complex protein Nup160
homolog; n=3; Sophophora|Rep: Nuclear pore complex
protein Nup160 homolog - Drosophila melanogaster (Fruit
fly)
Length = 1411
Score = 66.5 bits (155), Expect = 3e-10
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +2
Query: 158 VTFKEXAPNHNIPEKWKEIVLXTGGTHSTLQDIKLPQKAGGYWYKDSTKFYTRNRFIYWQ 337
++++E P + P +W E+ + TG T STLQD+K + +GGY YK++ TRNRFIYW+
Sbjct: 10 MSYREVIPRNLSPAEWIEVKINTG-TQSTLQDLKTFETSGGYCYKNTKNVQTRNRFIYWR 68
Query: 338 TTSD 349
T D
Sbjct: 69 TYQD 72
>UniRef50_Q17II0 Cluster: Putative uncharacterized protein; n=2;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 1321
Score = 56.8 bits (131), Expect = 2e-07
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 152 MPVTFKEXAPNH--NIPEKWKEIVLXTGGTHSTLQDIKLPQKAGGYWYKDSTKFYTRNRF 325
+PV ++E + W+EI + TGG H+ LQD+K ++ GGY + + F + NRF
Sbjct: 5 VPVQYREVPMRQLFSNASSWREINVSTGGIHNMLQDVKTSEQCGGYCFAEREDFRS-NRF 63
Query: 326 IYWQTTSDA 352
IYW+T D+
Sbjct: 64 IYWRTCRDS 72
>UniRef50_Q12769-2 Cluster: Isoform 2 of Q12769 ; n=3; Amniota|Rep:
Isoform 2 of Q12769 - Homo sapiens (Human)
Length = 190
Score = 43.6 bits (98), Expect = 0.002
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = +2
Query: 194 PEKWKEIVLXTGGTHSTLQD-IKLPQKAGGYWYKDSTKFY--TRNRFIYWQTTSD 349
P ++E + + GT + + +K + AGG++Y +S K + TRNRFI+W+T+ D
Sbjct: 22 PRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGD 76
>UniRef50_Q12769 Cluster: Nuclear pore complex protein Nup160; n=32;
Euteleostomi|Rep: Nuclear pore complex protein Nup160 -
Homo sapiens (Human)
Length = 1316
Score = 43.6 bits (98), Expect = 0.002
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = +2
Query: 194 PEKWKEIVLXTGGTHSTLQD-IKLPQKAGGYWYKDSTKFY--TRNRFIYWQTTSD 349
P ++E + + GT + + +K + AGG++Y +S K + TRNRFI+W+T+ D
Sbjct: 22 PRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGD 76
>UniRef50_Q4S160 Cluster: Chromosome 13 SCAF14769, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 13 SCAF14769, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1558
Score = 37.5 bits (83), Expect = 0.15
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 254 IKLPQKAGGYWYKDSTKFY--TRNRFIYWQTTSD 349
+K P AG + Y+DS K T NRFI+W T+ D
Sbjct: 41 VKFPDSAGAFHYEDSGKLLSVTSNRFIHWSTSGD 74
>UniRef50_Q7Q7T6 Cluster: ENSANGP00000021475; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000021475 - Anopheles gambiae
str. PEST
Length = 191
Score = 37.1 bits (82), Expect = 0.20
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 206 KEIVLXTGGTHSTLQDIKLPQKAGGYWYKDSTKFYT-RNRFIYWQT 340
K + + +GG ++ L D K P+ AGG+ T NRFIYW+T
Sbjct: 22 KSLSISSGGYNAMLMDSKTPEIAGGFRLNHIVNGVTLLNRFIYWRT 67
>UniRef50_Q623B6 Cluster: Putative uncharacterized protein CBG01923;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG01923 - Caenorhabditis
briggsae
Length = 2022
Score = 34.3 bits (75), Expect = 1.4
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +2
Query: 128 SPWQFLEAMPVTFKEXAPNHNIPEKWKEIVLXTGGTHSTLQDIKLPQKAGGYWY 289
S WQ MP+ FK+ A H I L + T+ ++K YWY
Sbjct: 1596 SLWQLCGMMPIEFKQHANYHRIDHSASNYFLTSATNIDTISNVKQLMNIFEYWY 1649
>UniRef50_Q6NI16 Cluster: Putative membrane protein; n=1;
Corynebacterium diphtheriae|Rep: Putative membrane
protein - Corynebacterium diphtheriae
Length = 195
Score = 32.3 bits (70), Expect = 5.7
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 5 RPMSVLTMLCEVNSQLKIFVFXYI*VDSLKYLDLGAFVLQSSPWQFLEAMPVTFKEXAPN 184
RP S + + L + V ++ D+L +G F+LQ+ WQ + +P+ F A N
Sbjct: 103 RPASQFAYIATCSIALAVVVGQFLRSDTLILFIIGQFLLQTVMWQSVRNLPIRFIMFAVN 162
>UniRef50_A6MAD9 Cluster: Gp074; n=1; Lactococcus phage KSY1|Rep:
Gp074 - Lactococcus lactis phage KSY1
Length = 215
Score = 31.5 bits (68), Expect = 10.0
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = +2
Query: 149 AMPVTFKEXAPNHNIPEKWKEIVLXTGGTHSTLQDIKLPQKAGGYWYKDSTKFYTRNRFI 328
A P + NH +K E ++ G H +D K+ KA G+ Y + + I
Sbjct: 16 ATPSLANADSANHTEEQKQNEALVVINGNHRNGEDRKVSLKANGFDYDEIQNIVNQ---I 72
Query: 329 YWQTTSDA 352
W TT ++
Sbjct: 73 IWGTTDES 80
>UniRef50_Q9YF02 Cluster: Translation initiation factor 2 subunit
alpha; n=3; Desulfurococcales|Rep: Translation
initiation factor 2 subunit alpha - Aeropyrum pernix
Length = 277
Score = 31.5 bits (68), Expect = 10.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 131 PWQFLEAMPVTFKEXAPNHNIPEKWKEIVLXTGGTHSTLQDIKL 262
P + LEA + +E +PE+W E +L T TH ++ +K+
Sbjct: 146 PMKGLEAAVLQGREALEKAGVPEEWIEPLLETAKTHVRVKTVKI 189
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 408,072,684
Number of Sequences: 1657284
Number of extensions: 6738119
Number of successful extensions: 13317
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13311
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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