Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H06
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_536| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.5  
SB_11447| Best HMM Match : 5HT_transporter (HMM E-Value=6.9)           27   6.0  
SB_39257| Best HMM Match : UPF0113 (HMM E-Value=7.3)                   27   7.9  

>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2463

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 139  ISRSYAGHVQGDXSKS*YSREMERNCTXHRWYSQYFTRH 255
            ++R+Y  HVQ + + + +  +M R CT H   ++ +T H
Sbjct: 1425 MNRTYTTHVQMNRTCTTHE-QMNRTCTTHEQMNRAYTTH 1462


>SB_536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 46  STKNICFQXYLSXFTKISXLGGFCITKF 129
           S +NICF   +   ++++ + GFCIT +
Sbjct: 82  SLRNICFDLDVDMTSELAIIYGFCITAY 109


>SB_11447| Best HMM Match : 5HT_transporter (HMM E-Value=6.9)
          Length = 108

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +2

Query: 146 EAMPVTFKEXAPNHNIPEKWKEIVLXTGGTHSTLQDIKLPQKAGGYWY 289
           E   + F    P  +I  +W+E+ L  G     +  +K+    G  WY
Sbjct: 28  EGRGIAFYSSVPAMSIGSRWREVALLYGTCPCLVDWVKMEGGRGIIWY 75


>SB_39257| Best HMM Match : UPF0113 (HMM E-Value=7.3)
          Length = 348

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 164 FKEXAPNHNIPEKWKEIVLXTGGTHSTLQDIKLPQKAGGY 283
           FKE    H     ++ + + TG ++STL+    P   GG+
Sbjct: 102 FKETVVTHKSAGGYRSLPMGTGHSNSTLRSGAQPLDVGGF 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,714,058
Number of Sequences: 59808
Number of extensions: 220335
Number of successful extensions: 360
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)