Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H04
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    44   1e-05
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   1.4  
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    27   1.8  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   7.3  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    24   9.6  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 143 VQLVIADVDPATGRAADTSKM-YVVCGAIRRMGESDDCIVRLTKKDGIL 286
           VQ+ +  VD A GR     K  Y + G +R  GESDDCI RLT +DG+L
Sbjct: 32  VQINVCAVD-AEGRQIPGEKTTYAISGFVRSKGESDDCINRLTTQDGLL 79



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 88  PRKCSASNRLIHAKDHAS 141
           PRKCSA+NR+I AKDHAS
Sbjct: 14  PRKCSATNRIIQAKDHAS 31



 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 48 MQNDAGEFVDLY*PEE 95
          M+N+AG+ VDLY P +
Sbjct: 1  MENEAGQLVDLYVPRK 16


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = -2

Query: 252 QSSDSPILRIAPQTTYILDVSAARPVAGSTSAITSCT*SMVLSVDEAVAGRAFP---RAS 82
           +SS      + P TT       +   + STSA +S   S  +SV    +  A P   + S
Sbjct: 144 RSSQFQSTTLTPSTTDSSSTDVSSSDSVSTSASSSNA-SNTVSVTSPASSSATPLPNQPS 202

Query: 81  TSQRIHRRRSAFYMYVHTVH 22
             Q +  +  AF  +VH+VH
Sbjct: 203 QQQFLVSKNDAFTTFVHSVH 222


>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 31  VDVHIKCRTTPVNSLTCTSPRKCSASNRLIH-AKD 132
           V + I C+   + S TCT    C  + RL++ AKD
Sbjct: 31  VAISILCKPPSLKSWTCTKGLLCLTNQRLVYIAKD 65


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -1

Query: 226 DSPT--DNIHFRCVSSTTCGGVYVSN 155
           D PT  D I   C     CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 110 LLAEHFLGLVQVNEFTGVVLHFICTS 33
           LL+   LG + V+EF  +V++  CTS
Sbjct: 201 LLSTDHLGKIAVHEFYNLVINKHCTS 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,661
Number of Sequences: 5004
Number of extensions: 25187
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)