Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H04
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     37   0.009
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    35   0.027
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949     27   7.2  
04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200     27   9.5  
04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497     27   9.5  
01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740...    27   9.5  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 88  PRKCSASNRLIHAKDHAS 141
           PRKCSA+NR+I AKDHAS
Sbjct: 14  PRKCSATNRIITAKDHAS 31


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 35.1 bits (77), Expect = 0.027
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +1

Query: 88  PRKCSASNRLIHAKDHAS 141
           PRKCS +NR+I AKDHAS
Sbjct: 14  PRKCSTTNRIITAKDHAS 31


>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
          Length = 550

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -2

Query: 216 QTTYILDVSAARPVAGSTSAIT-SC-T*SMVLSVDEAVAGR 100
           Q T IL+ +  +P+  STSAIT +C    M+L +D+ V  R
Sbjct: 510 QITNILEENVVQPLLVSTSAITLACECVRMILKIDDIVTVR 550


>04_04_1014 -
          30111658-30112456,30112777-30113054,30114060-30114200
          Length = 405

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 99 AFPRASTSQRIHRRRSAFY 43
          A PRAS   R+HRR+S  Y
Sbjct: 33 ARPRASLESRLHRRKSFLY 51


>04_04_1007 -
          30050955-30051753,30052074-30052351,30053357-30053497
          Length = 405

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 99 AFPRASTSQRIHRRRSAFY 43
          A PRAS   R+HRR+S  Y
Sbjct: 33 ARPRASLESRLHRRKSFLY 51


>01_05_0552 -
           23173106-23173184,23173266-23173411,23173543-23174022,
           23174106-23174161,23175538-23175637,23175708-23175765,
           23176163-23176278,23176915-23176974,23177297-23177383,
           23178250-23178341,23178409-23178587,23178946-23179087,
           23179655-23179706,23180241-23180473,23180569-23180745,
           23180882-23181044,23181242-23181392,23181493-23181574,
           23182193-23182332,23182499-23183013
          Length = 1035

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 10  SVNSVYRVDVHIK-CRTTPVNSLTCTSPRKCSASNRLIHAKDHASGTA 150
           SVN   +   +IK  + TP N  T +    CS++++L+++ D  S  A
Sbjct: 815 SVNPTTKRSNYIKFAQITPANRSTLSMKHGCSSTSQLLYSGDKLSTDA 862


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,422,172
Number of Sequences: 37544
Number of extensions: 175154
Number of successful extensions: 471
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)