Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H04
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)           30   0.79 
SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               27   7.4  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
          Length = 1118

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 192 SAARPVAGSTSA-ITSCT*SMVL-SVDEAVAGRAFPRASTSQRIHRRRSAF 46
           SA+ PVAGSTS+ +T  T S +  SV   V G+ F  +S       RR  +
Sbjct: 330 SASSPVAGSTSSPVTGSTSSPIAGSVSSPVGGKCFVTSSPEVESSARRKLY 380


>SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 958

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 152 LAVPEAWSLAWMRRLLAEHFLGLVQVNEFTGVVLHFICTSTRYT 21
           +A+ E W  +    LL EH L      +     +H +C  T YT
Sbjct: 435 VALGEIWGYSVGWSLLLEHLLAAASATKLCSQYIHVLCNGTIYT 478


>SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +2

Query: 83  LARGNARPATASSTLRTMLQVQ--LVIADVDPATGRAADTSK 202
           +ARG A   TA S + T+ + +  ++ A++DP TG+ A  SK
Sbjct: 245 VARGVAGHHTAESIVETINRAESKILTAELDPLTGKIALMSK 286


>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 275

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/73 (21%), Positives = 28/73 (38%)
 Frame = +2

Query: 8   HLSIPCTVWTYI*NAEXXXXXXXLVLARGNARPATASSTLRTMLQVQLVIADVDPATGRA 187
           +L IPC + T +           +V      R     + L  +    L++AD+ P T   
Sbjct: 208 NLIIPCMLITVL------SLLSFIVSTDSGERVGLVITDLLALTVFMLIVADILPPTSEV 261

Query: 188 ADTSKMYVVCGAI 226
                +Y++C  I
Sbjct: 262 VPVISIYIICSTI 274


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 279 PSFFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAIT 151
           P   V ++ Q   +P + +AP+TT + + + A      T   T
Sbjct: 396 PEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTT 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,946,426
Number of Sequences: 59808
Number of extensions: 199548
Number of successful extensions: 492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)