Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H04
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...    62   1e-10
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    30   0.92 
Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
 Frame = +2

Query: 143 VQLVIADVDPATGRAAD-TSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKN 295
           VQ+   DVDP TGR     S  Y +CGAIRRMGESDD I+RL +KDG++ ++
Sbjct: 32  VQIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDAILRLAQKDGLVPRD 83



 Score = 34.7 bits (76), Expect = 0.032
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +1

Query: 88  PRKCSASNRLIHAKDHAS 141
           PRKCS+SNR+I  KDHAS
Sbjct: 14  PRKCSSSNRIIGPKDHAS 31


>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
           protein F59A6.5 protein.
          Length = 1286

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +1

Query: 1   AFASVNSVYRVDVHIKCRTTPVNSLTCTSPRKCSASNRLIHAKDHASGTA 150
           AFA        DVH+     P  + TC  P +C+   R  H    +SG +
Sbjct: 782 AFAKAKKCSHCDVHVHASCAPRVNNTCGMPLQCATYYRENHTTVSSSGVS 831


>Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical
           protein T25E12.4b protein.
          Length = 220

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 164 VDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 280
           V  + G  + +S   +   A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,995,113
Number of Sequences: 27780
Number of extensions: 146651
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)