Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H02
         (838 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)             175   5e-44
SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)                    29   3.5  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score =  175 bits (425), Expect = 5e-44
 Identities = 85/119 (71%), Positives = 95/119 (79%)
 Frame = +1

Query: 442 MAAFDMDDPKSIVSPGGVGFDINCGVRLLRTNLHEKDVLPIKEQLAQSLFDHIPVGVGSK 621
           MAAFDM  P+++VSPG              TNL EKDV P+KE+LAQSLFDHIPVGVGSK
Sbjct: 1   MAAFDMSLPEAVVSPG--------------TNLEEKDVQPVKERLAQSLFDHIPVGVGSK 46

Query: 622 GIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSKVSLXAKKRGLP 798
           G+IPM A+DLE+ALEMG+DWSLREGY WAEDKEHCEEYGRML AD +KVS  AKKRGLP
Sbjct: 47  GVIPMGAKDLEDALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADSAKVSAKAKKRGLP 105



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 801 LGTLGAGNHYA 833
           LGTLGAGNHYA
Sbjct: 107 LGTLGAGNHYA 117


>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
          Length = 1418

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
 Frame = +1

Query: 424 GFAIGNMAAFDMDDPKSIVSPGGVGFDINCGVRLLRTNLHEKDVLPIKEQLAQSLFDHIP 603
           GF     AAF + D          G ++   ++ +   L + DVL +  +L    +  +P
Sbjct: 84  GFFASKGAAFSIPDGDFARKASKHGGEMQVHLQSMVNLLRDNDVLRLVVKLETKYY--LP 141

Query: 604 VGVGSKGIIP-MNARDLEEALEMGMDW-SLREGYVWAEDKEHCEEYGRMLNADPSKVS 771
             V    ++   +  D+EE++ +G+DW   R  + W      C +  R  N  P+  S
Sbjct: 142 GKVRYLAVVSSFSLDDIEESVVLGIDWVDERTAFQWI---HKCSDNARRNNQYPAGTS 196


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 21/67 (31%), Positives = 26/67 (38%)
 Frame = -3

Query: 515 PQFISNPTPPGDTIDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAATLAICFTPG 336
           P+   N TPP     L  +  +    P   PYP  TS   T +P IP           P 
Sbjct: 627 PKPFPNITPPEVRPSLPGTPPETKTKPPLAPYPPKTSPKTTPKPHIPP---------APS 677

Query: 335 RNPPDIP 315
           R PP +P
Sbjct: 678 RPPPQLP 684


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,943,551
Number of Sequences: 59808
Number of extensions: 607149
Number of successful extensions: 1444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)