Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H01
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 182 4e-47
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 182 4e-47
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 29 0.55
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 29 0.96
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.96
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 29 0.96
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.9
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 6.8
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 9.0
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 9.0
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 25 9.0
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 9.0
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 182 bits (444), Expect = 4e-47
Identities = 87/170 (51%), Positives = 123/170 (72%)
Frame = +1
Query: 193 KIASEGLKGRVFEVSLXDLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 372
K A++ LKGR+ EVSL DLQ D E SFRK +L E +QG++ L +F+G D+T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRS 112
Query: 373 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 552
+V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT YAQ +Q+RAI +KM ++I
Sbjct: 113 LVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVI 172
Query: 553 TRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 702
++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+
Sbjct: 173 QNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPK 222
Score = 39.9 bits (89), Expect = 4e-04
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +2
Query: 86 IVDPFTRKDWYDVKAPIYVQ 145
+VDPF+RKDWYD+KAP + +
Sbjct: 20 VVDPFSRKDWYDIKAPAFFE 39
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 135 SMFSKRQVGTTLVNRTQGNENCFGRIEGK 221
+ F + VG TLVNRT G +N ++G+
Sbjct: 36 AFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 182 bits (444), Expect = 4e-47
Identities = 86/170 (50%), Positives = 126/170 (74%)
Frame = +1
Query: 193 KIASEGLKGRVFEVSLXDLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 372
K A++ LKGR+ EVSL DLQ D E +FRK +L E +QG++ L +F+G+ +T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRS 112
Query: 373 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 552
+V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT YAQ +Q+RAIR+KM ++I
Sbjct: 113 LVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVI 172
Query: 553 TRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 702
++ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P+
Sbjct: 173 QNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPK 222
Score = 38.3 bits (85), Expect = 0.001
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +2
Query: 86 IVDPFTRKDWYDVKAPIYVQ 145
+VDPF+RK+WYD+KAP + +
Sbjct: 20 VVDPFSRKEWYDIKAPAFFE 39
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 135 SMFSKRQVGTTLVNRTQGNENCFGRIEGK 221
+ F + VG TLVNRT G +N ++G+
Sbjct: 36 AFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 29.5 bits (63), Expect = 0.55
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1
Query: 229 RKLFPSILPKQFSFPWVRLTSVVPTCLLLNIDR 131
R LFPSI P SFP + + + + T LLL+ DR
Sbjct: 332 RWLFPSIPPSHLSFP-IHVPNFMITSLLLHKDR 363
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 0.96
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +1
Query: 190 TKIASEGLKGRVFEVSLXDLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 369
TK+A KG +V++ L+ DAE + + F I EY++ N D T K
Sbjct: 91 TKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK-- 144
Query: 370 WMVKKWQTLIE-ANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 492
+ +W ++ E + D + C+ ++ L+ K
Sbjct: 145 -FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.7 bits (61), Expect = 0.96
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 223 VFEVSLXDLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 396
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 397 IEANIDVKTT 426
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 28.7 bits (61), Expect = 0.96
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +1
Query: 544 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFRDL 714
E + D +R++ ++ + +A ++ C GI +R+VC R + +DL
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCARAPLAMTPDLLQDL 441
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 390 LPFFNHPPELIGCEVHAVEVAEHITS 313
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 450 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 542
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 367 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 504
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +1
Query: 457 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 585
G T +DS+ ++ A H + R +++K E ++ D +N +++
Sbjct: 7 GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -1
Query: 160 PTCLLLNIDRSLDIVPIFASEWVDNLLLN 74
P +L+ +DR++D++P+ W L++
Sbjct: 246 PRPILILLDRTVDLIPMINHSWTYQALIH 274
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 346 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 444
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,336
Number of Sequences: 5004
Number of extensions: 66130
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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