Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H01
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 220 9e-58
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 218 5e-57
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 217 6e-57
07_03_0473 - 18525712-18525858,18526049-18526162,18526442-185265... 30 2.3
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 4.1
06_03_0290 - 19193707-19193752,19193822-19194090 28 7.1
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 28 9.4
01_01_0891 + 7023383-7023700,7024627-7024705,7024888-7024951,702... 28 9.4
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 220 bits (538), Expect = 9e-58
Identities = 106/172 (61%), Positives = 136/172 (79%)
Frame = +1
Query: 190 TKIASEGLKGRVFEVSLXDLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 369
TKIASEGLK RVFEVSL DLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 370 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 549
+VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 550 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 705
+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F
Sbjct: 172 MANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKF 223
Score = 35.9 bits (79), Expect = 0.035
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 89 VDPFTRKDWYDVKAP 133
VDPF +KDWYD+KAP
Sbjct: 21 VDPFAKKDWYDIKAP 35
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 135 SMFSKRQVGTTLVNRTQGNE 194
S+F+ R +G TLV+RTQG +
Sbjct: 36 SVFNVRNIGKTLVSRTQGTK 55
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 218 bits (532), Expect = 5e-57
Identities = 105/172 (61%), Positives = 135/172 (78%)
Frame = +1
Query: 190 TKIASEGLKGRVFEVSLXDLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 369
TKIASEGLK RVFEVSL DLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 370 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 549
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 550 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 705
+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F
Sbjct: 172 MVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKF 223
Score = 35.9 bits (79), Expect = 0.035
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 89 VDPFTRKDWYDVKAP 133
VDPF +KDWYD+KAP
Sbjct: 21 VDPFAKKDWYDIKAP 35
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 135 SMFSKRQVGTTLVNRTQGNE 194
S+F+ R VG TLV+RTQG +
Sbjct: 36 SVFNVRNVGKTLVSRTQGTK 55
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 217 bits (531), Expect = 6e-57
Identities = 106/172 (61%), Positives = 134/172 (77%)
Frame = +1
Query: 190 TKIASEGLKGRVFEVSLXDLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 369
TKIASEGLK RVFEVSL DLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLR 111
Query: 370 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 549
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 550 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 705
+ + +L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P+F
Sbjct: 172 MANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKF 223
Score = 36.3 bits (80), Expect = 0.027
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +2
Query: 89 VDPFTRKDWYDVKAP 133
VDPF++KDWYD+KAP
Sbjct: 21 VDPFSKKDWYDIKAP 35
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 135 SMFSKRQVGTTLVNRTQGNE 194
++FS R +G TLV+RTQG +
Sbjct: 36 TVFSVRNIGKTLVSRTQGTK 55
>07_03_0473 -
18525712-18525858,18526049-18526162,18526442-18526522,
18526787-18526865,18526902-18526996,18527092-18527170,
18527339-18527450,18527682-18527770,18527868-18527938,
18528846-18528962
Length = 327
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = -1
Query: 271 FPRQCQLVDQXGKLRK---LFPSILPKQFSFPWVRLTSVVPTCLLLNIDRSLDIVPIFAS 101
F +QC L+ + + L + LP ++F W++L + + L + I + + VP+ +
Sbjct: 180 FTKQCNLIIYYAMIEQYDNLAQNSLP--YNFSWIKLKAPLVVALAIKIHQFVASVPVLKA 237
Query: 100 EWVDNLLLNTFFTALRQAFI 41
NL+L+ F+ RQ I
Sbjct: 238 ----NLVLSCTFSCNRQVSI 253
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 583 EVVNKLIPDSIAKDIEKACHGIYPLRD 663
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 326 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 415
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 724 HQLRDLENGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQ--ESTCSPP 584
H+L ASS+ S C H GRC+ P CP+ S+ E+T P
Sbjct: 16 HRLGPANGAASSSTSGKVCIHWRAGRCNRFP--CPYLHSELPEATAKRP 62
>01_01_0891 +
7023383-7023700,7024627-7024705,7024888-7024951,
7025324-7025401,7025513-7025708,7025895-7025963,
7026115-7026254,7026425-7026547,7027390-7027582,
7028872-7029034,7029433-7029476,7029683-7029724
Length = 502
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 52 VEGR*KRC*EEDCRPIHSQRLVRCQGSDLCSARGKSAPRLSTVPRETKIASEGLKGRVFE 231
V GR +R E RP H L+RC+ + G S P T A KG +++
Sbjct: 11 VHGRLRRSPELHARPYHRPSLLRCRAFKQEADNGGEEASSSPPPPTTAEARRRRKGPLYK 70
Query: 232 V 234
+
Sbjct: 71 L 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,110,862
Number of Sequences: 37544
Number of extensions: 464919
Number of successful extensions: 1348
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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