Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H01
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         160   1e-39
SB_50257| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_35933| Best HMM Match : CIMR (HMM E-Value=6.3e-14)                  30   2.3  
SB_26711| Best HMM Match : I-set (HMM E-Value=0)                       30   2.3  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              29   4.1  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  160 bits (388), Expect = 1e-39
 Identities = 73/105 (69%), Positives = 90/105 (85%)
 Frame = +1

Query: 391 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTN 570
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +IITR+V+ 
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 571 SELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 705
           ++L+EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVLK+P+F
Sbjct: 62  NDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKF 106


>SB_50257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 88  CRPIHSQRLVRCQGSDLCSARGKSAPRLSTVPRETKIASEGLKG 219
           C+PI +    +C+GSDLC     + P  +   ++ K+  EG  G
Sbjct: 86  CQPIRNTEEKQCEGSDLCKITSSAIPMTA---KDRKLFYEGRFG 126


>SB_35933| Best HMM Match : CIMR (HMM E-Value=6.3e-14)
          Length = 644

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 88  CRPIHSQRLVRCQGSDLCSARGKSAPRLSTVPRETKIASEGLKG 219
           C+PI +    +C+GSDLC     + P  +   ++ K+  EG  G
Sbjct: 594 CQPIRNTEEKQCEGSDLCKITSSAIPMTA---KDRKLFYEGRFG 634


>SB_26711| Best HMM Match : I-set (HMM E-Value=0)
          Length = 327

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +1

Query: 79  EEDCRPIHSQRLVRCQGSDLCSARGKSAPRLSTVPRETKIASEGLKGRVFEVSLXDLQAD 258
           E  C  I  + ++  +GS  C  R +    LST         +G +G  FE  L D++ +
Sbjct: 61  ESSCTLIIQEAIINDEGSYRCVVRNELGSALSTAEVLVNEREKG-EGPRFEERLRDVRVE 119

Query: 259 TDAERSFR 282
              E SF+
Sbjct: 120 IGREASFK 127


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 223  VFEVSLXDLQADTDAERSFRKFRLIAEYVQ 312
            +F  +  D+QA+++    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -3

Query: 410  MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 246
            ++ SM +C ++ + +SL   R +   +  +L PC Y  ++++L + +    S+S CR
Sbjct: 948  VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 284 LRKDLSASVSACRSXRETSKTLPFNPSEAIFV 189
           LRK L    S  +  RE  + L FNP E+ +V
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYV 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,121,136
Number of Sequences: 59808
Number of extensions: 523439
Number of successful extensions: 1559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)