Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_H01
         (766 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   272   8e-75
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    26   1.5  
EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.           26   1.5  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    25   2.6  
AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.        25   3.4  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   5.9  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  272 bits (667), Expect = 8e-75
 Identities = 128/172 (74%), Positives = 150/172 (87%)
 Frame = +1

Query: 190 TKIASEGLKGRVFEVSLXDLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 369
           TKIAS+GLKGRVFEVSL DLQ + DAERSFRKF+L+AE V GR+VL NFHGM LTTDKLR
Sbjct: 55  TKIASDGLKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLR 114

Query: 370 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 549
            MV KWQTLIE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCYAQH+Q++ IR KM  I
Sbjct: 115 SMVNKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAI 174

Query: 550 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 705
           I R++T+++L+ VV KL+PDSIAKDIEKAC  +YPL DV IRKVKVLK+PRF
Sbjct: 175 IKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRF 226



 Score = 40.7 bits (91), Expect = 5e-05
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +2

Query: 86  IVDPFTRKDWYDVKAP 133
           +VDPFTRKDWYDVKAP
Sbjct: 21  VVDPFTRKDWYDVKAP 36



 Score = 33.5 bits (73), Expect = 0.007
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 135 SMFSKRQVGTTLVNRTQGNENCFGRIEGKSF 227
           +MF  RQ G TLVNRTQG +     ++G+ F
Sbjct: 37  NMFKNRQSGKTLVNRTQGTKIASDGLKGRVF 67


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 25  HGGREK*RPVEGR*KRC*EEDCRPIHSQRLVRCQGSDLCSARGKSAPRLSTV 180
           H      RP  GR +R   ED       ++V  +G+ LC+A   +A   +T+
Sbjct: 124 HNRNSDPRPATGRKRRRIIEDSASPGVNKIVNSRGNTLCAASSPNAYTNTTI 175


>EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.
          Length = 493

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +1

Query: 232 VSLXDLQADTDA-ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 393
           V+L +L A +D  E    ++  I + +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 181 VNLAELAASSDTLEHLNLQYNFIYD-IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 234


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -1

Query: 718 LRDLENGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 587
           L  L NG    +   G  H   G    RPSR    ++  S C P
Sbjct: 141 LLQLVNGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRP 184


>AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.
          Length = 286

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +1

Query: 232 VSLXDLQADTDA-ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 393
           V+L +L A +D  E    ++  + + +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 106 VNLAELAASSDTLEHLNLQYNFMYD-IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 159


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 678 LSDANIAQRVDAMAGLLDVLGNGVRNQLV 592
           L+ AN  QR++    L D++G+  RN+++
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVL 588


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,735
Number of Sequences: 2352
Number of extensions: 17092
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)