Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_H01
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 212 2e-55
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr... 30 1.6
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein. 30 1.6
Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical pr... 28 8.4
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila... 28 8.4
L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical pr... 28 8.4
>Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical
protein F56F3.5 protein.
Length = 257
Score = 212 bits (518), Expect = 2e-55
Identities = 106/171 (61%), Positives = 129/171 (75%)
Frame = +1
Query: 190 TKIASEGLKGRVFEVSLXDLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 369
TKIASEGLKGRVFEVSL DL ++E FRKF+LIAE VQG+NVL NFH M +T DKL
Sbjct: 53 TKIASEGLKGRVFEVSLGDLN---NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLC 109
Query: 370 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 549
+VKKW TLIEAN VKTTDGY LRVF I FT K +KT Y + +++R IR +M
Sbjct: 110 SIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGC 169
Query: 550 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 702
I ++VT +L+EVV+KLIPDSI KDIEK C +YPL++V IRKVK++KRP+
Sbjct: 170 IEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPK 220
Score = 35.9 bits (79), Expect = 0.032
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +2
Query: 89 VDPFTRKDWYDVKAP 133
VDPF+RK+WYD+KAP
Sbjct: 20 VDPFSRKEWYDIKAP 34
Score = 35.1 bits (77), Expect = 0.055
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 135 SMFSKRQVGTTLVNRTQGNENCFGRIEGKSF 227
+MF+ RQVG TL+NRTQG + ++G+ F
Sbjct: 35 NMFNTRQVGKTLINRTQGTKIASEGLKGRVF 65
>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
C25G4.5 protein.
Length = 1263
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -3
Query: 395 RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSXRE-TSKTL 219
R H H LS+ SMP ++ T+RP + + L++ + + + RS R S +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181
Query: 218 PFNPSEAI 195
N SE++
Sbjct: 1182 VLNSSESL 1189
>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
Length = 1263
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -3
Query: 395 RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSXRE-TSKTL 219
R H H LS+ SMP ++ T+RP + + L++ + + + RS R S +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181
Query: 218 PFNPSEAI 195
N SE++
Sbjct: 1182 VLNSSESL 1189
>Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical
protein K08F8.2 protein.
Length = 401
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -3
Query: 407 LASMRVCHFLTIHLSLSVVRSMPWKLQ-STLRPCTY-SAINLNLRKDLSASVSACRSXRE 234
+AS++ LT+ L L +P LQ L+P T S + + ++ S S S+ S
Sbjct: 132 IASLQASSMLTVPL-LQAASHIPSMLQLCQLQPTTIQSPVYASTQQPASTSASSLFSSSS 190
Query: 233 TSKTLPFNPSEA 198
+S PF PSE+
Sbjct: 191 SSAFHPFRPSES 202
>Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical
protein F49C5.3 protein.
Length = 551
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 463 TNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE---VVNKLIPDSIAKDIE 630
T + S+S + QH Q RA++K M E + V N ++ E VV K + D +I+
Sbjct: 198 TGRSSISAGFDVF-QHLQNRAVQKTMIEQLESAVRNQDVMEMGNVVKKGLEDGTLSEIQ 255
>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
roughdeal) homologprotein 1 protein.
Length = 2049
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -1
Query: 265 RQCQLVDQXGKLRKLFPSILPKQFSFPWVRLTSVVPTCLLLNIDRSL 125
++CQ+VD+ K L + L +Q F WV T + + ++++ S+
Sbjct: 1830 KKCQVVDKIAKANGLDLTALHEQLVFSWVEDTQTIISINHVDMNESI 1876
>L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical
protein F54H12.8 protein.
Length = 570
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 697 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 581
ASST S + R +P+ PWQ Q S +PPP
Sbjct: 104 ASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,499,590
Number of Sequences: 27780
Number of extensions: 381795
Number of successful extensions: 1110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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