Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_G24
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 49 9e-07
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 32 0.084
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.59
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.2
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 27 4.2
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 26 7.3
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 9.6
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 9.6
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 25 9.6
>SPBC800.07c |tsf1||mitochondrial translation elongation factor
EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 48.8 bits (111), Expect = 9e-07
Identities = 47/224 (20%), Positives = 87/224 (38%), Gaps = 14/224 (6%)
Frame = +3
Query: 165 LAKLREKTGYTIANCKKALEMHN-NDADKAETWLHEQAQAMGWAKATKLAGRTALQGLV- 338
+ KLR +T ++ K+++E + + A L ++ G A K RTA +G +
Sbjct: 37 IKKLRSETNASMDLVKQSVEEAGVGNLELAREILKKKIVQRGGKLAEKSKNRTAKEGWII 96
Query: 339 -AVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFA---HTKLQAKGPITKME 506
+ D + E+NCE+DFVA+ FQ + A + H+ + +
Sbjct: 97 QCISEDGRKAVMAEINCESDFVAQTTPFQDLARRIASTFLHYLPTNHSSYSVEATLKNEI 156
Query: 507 LDSEQLGTLHAEGGKK-------LSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYT 665
L + + + E +K L E + GE ++R C A I ++
Sbjct: 157 LKHQAYVSKNHEANEKDVSSNVSLEEEIVKMTSFTGEKVQVQRLHCMNARVPSTAIGIFS 216
Query: 666 HPAPXXXXXXXXGKYGALLAYKQP-NDVXDIGRQLCQHIVGCAP 794
H A G+ G+++ + + Q+ + IV P
Sbjct: 217 HGAKQSSPLQQLGRIGSMVQINSDLSTRKGLSNQIAKEIVAQDP 260
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 32.3 bits (70), Expect = 0.084
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -3
Query: 394 SVSQLSSTRAPW-FLSNLTATNPWRAVLPANLVAFAHPIAWACSWSHV-SALSASLLCIS 221
S +L+ST W F++N+ + PW LP+ + H + S + + L LLCIS
Sbjct: 3948 SYLKLASTEPLWLFINNIHLSTPWAEKLPSKMSNHLHKNSRIVCLSEIHNQLPHQLLCIS 4007
Query: 220 NAFL 209
+ +
Sbjct: 4008 RSIV 4011
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.59
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 6/165 (3%)
Frame = -3
Query: 619 SARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV*ANLNEAIA 440
S+ S+ S + I S++ S F S + PS S+SSSI + S + + I+
Sbjct: 581 SSSTSSPSSTSLSISSSSTSSTFSSASTSS-PS-SISSSISSSSTILSSPTPSTSSLMIS 638
Query: 439 ASSIIF*NLSFLATKSVSQLSSTRAPWFLSNLTATNPWRAVLPANLVAFAHPIAWA---- 272
+SSII + S L++ + S+ + S++ ++ ++L+ + P+A +
Sbjct: 639 SSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSP 698
Query: 271 --CSWSHVSALSASLLCISNAFLQLAIV*PVFSRSLASSEDSAAL 143
S S VS SASL I+++ L L + S ++ +S +S+ L
Sbjct: 699 IPSSSSLVSTYSASLSNITHSSLSLTAM--SSSSAIPTSVNSSTL 741
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.4
Identities = 25/96 (26%), Positives = 47/96 (48%)
Frame = -3
Query: 619 SARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV*ANLNEAIA 440
S+ LST+ P+ S++ S + S+ + S S SSS + + S + + I+
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 439 ASSIIF*NLSFLATKSVSQLSSTRAPWFLSNLTATN 332
+SS + S +T S SS+ + F S L++++
Sbjct: 292 SSSSS--SSSPTSTSSTISSSSSSSSSFSSTLSSSS 325
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.8
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 2/164 (1%)
Frame = -3
Query: 646 TSSLFAFQHSARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV 467
+SS +A S S + S N + + P S+ S + SSS+ + SL
Sbjct: 71 SSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLA 130
Query: 466 *ANLNEAIAASSIIF*NLSFLATKSVSQLSSTRAPWFLSNLTATNPWRAVLPANLVAFAH 287
+++ + ASS I S LA+ S + SS+ A ++ T+ P + ++L + A
Sbjct: 131 SSSITSSSLASSSI--TSSSLASSSTT--SSSLASSSTNSTTSATPTSSATSSSLSSTAA 186
Query: 286 PIAWACSWSHVSALSA--SLLCISNAFLQLAIV*PVFSRSLASS 161
+ S S+L++ S S++ A S SLASS
Sbjct: 187 SNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASS 230
Score = 25.4 bits (53), Expect = 9.6
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Frame = -3
Query: 649 LTSSLFAFQHSARLSTAFSPT-EPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACS 473
LTSS S +T+ SPT + S++ + + S + S SL+SS LA S
Sbjct: 85 LTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASS--STTSSSLASSSITSSSLASS 142
Query: 472 LV*ANLNEAIAASSIIF*NLSFLATKSVSQLSSTRAPW--FLSNLTATN 332
+ + ++A+SS +L+ +T S + + T + LS+ A+N
Sbjct: 143 SI---TSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASN 188
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 706 NMGPCSLTNSQTTXKTSAGNYASTSSAV 789
N+G CSL T S +YA TSS++
Sbjct: 427 NIGRCSLKKLSTIRSCSTNSYAFTSSSL 454
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 189 GYTIANCKKALEMHNNDADKAETWL 263
G+T+A +K L NN+ ++A W+
Sbjct: 652 GFTVAQARKGLLESNNNIERAVDWI 676
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 670 QRLAVLVIIPLENMGPC--SLTNSQTTXKT 753
+R+ LV+IP EN+GP ++ N +T T
Sbjct: 96 ERIRSLVVIPSENLGPLHEAIVNLHSTYMT 125
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 652 SQVIPIQRLAVLVIIPLENMGPCSLTNSQTTXKTSAGNY 768
S+++P + + +++ LEN+ LT+S + GNY
Sbjct: 468 SKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDTLGNY 506
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 126 HTSPAYKAAESSLLAKLREKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMG 287
H + +S L +R +A K +E A KA+TWL +A+G
Sbjct: 741 HKDECFPNTDSDLTVLVRYDDNALLAAYSKVVER----AHKADTWLENYKEALG 790
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 354 KNHGALVELNCETDFVAKNDKFQKMIEDAA 443
K +G +V++N DF+ K + I+DAA
Sbjct: 258 KTNGGVVQVNFYQDFIRKPGSDRATIDDAA 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,514
Number of Sequences: 5004
Number of extensions: 71008
Number of successful extensions: 220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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