Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_G24
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0591 - 19051748-19051807,19053044-19053133,19053238-190533... 77 2e-14
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 74 1e-13
11_06_0445 - 23679918-23680282,23680415-23683349 31 1.1
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 30 2.5
02_05_0033 + 25250312-25250563,25251469-25251540,25251925-252520... 29 3.3
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174... 29 4.4
07_03_1390 + 26217623-26218370,26218435-26218934 29 4.4
09_04_0640 - 19166953-19167285,19167631-19168449,19169057-191691... 29 5.8
03_04_0089 - 17217235-17217461,17218298-17218418 28 7.6
>08_02_0591 -
19051748-19051807,19053044-19053133,19053238-19053363,
19053920-19054104,19054644-19054818,19057111-19057191,
19057242-19057265,19057581-19057753,19057847-19058123,
19059093-19059149,19059604-19059699
Length = 447
Score = 77.0 bits (181), Expect = 2e-14
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 15/243 (6%)
Frame = +3
Query: 111 LIRRIHTSPAYKAAESSLLAKLREKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGW 290
L+RR +S + + +L+ +LRE+T I + K +L N D D A+ L ++ G
Sbjct: 101 LLRRF-SSEVPASEQMNLIKQLRERTSAPIKDVKASLVSCNWDIDVAQKDLRKR----GV 155
Query: 291 AKATKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFK---F 461
A K + RTA +GL+A+ D+ A+VELNCETDFVA+ND FQ ++ + FK
Sbjct: 156 VLAAKKSSRTAAEGLLAIAQDEKRAAVVELNCETDFVARNDVFQYLL--VLVRGFKASSL 213
Query: 462 AHTKLQAKG------PITKMELDSEQLGTLHAE--GGKKLSEILALFIGSVGENAVLRRA 617
A L A+ P L++ + H + G + + VGEN RR
Sbjct: 214 AKLALSARDPGELVFPFGPDYLENLNVNLDHPKLSGETTVQSAVTEVAAMVGENVKFRRG 273
Query: 618 ECWKANSEDVKIAGYTHPAPXXXXXXXXGKYGALLAYKQPNDVXD----IGRQLCQHIVG 785
+ V + Y H P G L + N D +G+ + HIV
Sbjct: 274 FIMSTTAHGV-VCSYMHTCPQPGLGRLAGL--ITLEAEDSNAPLDALQRVGKSIAMHIVA 330
Query: 786 CAP 794
P
Sbjct: 331 TKP 333
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 74.1 bits (174), Expect = 1e-13
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Frame = +3
Query: 132 SPAYKAAESSLLAKLREKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWAKATKLA 311
S A +L+ +LRE TG + +CKKAL D +KA+ +L ++ G A A K A
Sbjct: 681 STATATISPALVKQLREATGAGMMDCKKALAESGGDIEKAQEFLRKK----GLAAADKRA 736
Query: 312 GRTALQGLVAVKF-DKNHGALVELNCETDFVAKNDKFQKMIEDAAI 446
GR +G + D G L+E+NCETDFV++ D F+++++D A+
Sbjct: 737 GRATAEGRIGSYIHDSRIGVLIEVNCETDFVSRGDIFKELVDDLAM 782
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/101 (34%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Frame = +3
Query: 147 AAESSLLAKLREKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWAKATKLAGRTAL 326
A ++L+ +LR++TG + +CKKAL D +A+ +L ++ G + A K + R
Sbjct: 927 AISAALVKQLRDETGAGMMDCKKALAETGGDIQQAQEFLRKK----GLSSADKKSSRLTA 982
Query: 327 QGLVAVKFDKNH-GALVELNCETDFVAKNDKFQKMIEDAAI 446
+GL+ N G ++E+N ETDFVA+N+KF++++ D A+
Sbjct: 983 EGLIGAYIHDNRIGCMIEINSETDFVARNEKFKELVNDLAM 1023
>11_06_0445 - 23679918-23680282,23680415-23683349
Length = 1099
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = +3
Query: 213 KALEMHNNDADKAETWLHEQAQAMGWAKATKLAGRTALQGLVAVKFDKNHG----ALVEL 380
KAL + E+W+H + + K LA R + G +A D H +LV
Sbjct: 868 KALILEYRANGNLESWIHPKPCSQSPPKLFSLASRVRVAGDIATALDYLHNRCTPSLVHC 927
Query: 381 NCETDFVAKNDKFQKMIEDAAIASF 455
+ + V +D+ I D +A F
Sbjct: 928 DLKPSNVLLDDEMVACISDFGLAKF 952
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 640 RMSRSQVIPIQRLAVLVIIPLENMGPCSLTN-SQTTXKTSAGNYASTSSAVXPTKIG 807
RMS + ++RL + +N G CSL N S + + ++G+ AS+SS+ T G
Sbjct: 828 RMSNEVAMEVKRLKRKLGKDKQNCGTCSLINCSCQSDRANSGSSASSSSSEASTLYG 884
>02_05_0033 +
25250312-25250563,25251469-25251540,25251925-25252069,
25253449-25253558,25253665-25254079,25254166-25254413
Length = 413
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 96 FMIFQLIRRIHTSPAYKAAESSLLA-KLREKTGYTI 200
++ QLI++ PA KAA +S+LA KL E+TG +
Sbjct: 186 YLTQQLIQKYDLDPAAKAAAASVLASKLGEETGLKV 221
>11_06_0021 +
19314211-19314311,19315202-19315307,19317135-19317412,
19318587-19318692,19318812-19319159,19319237-19319313,
19319392-19319516,19319884-19320135,19320314-19320336
Length = 471
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +3
Query: 402 AKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKM-ELDSEQLGTLHAEGGKKLSEILALF 578
AK+D+ K + A + A P+ K E D +Q G G +SE
Sbjct: 89 AKDDRSSKEESEDAQPTSDSNKISSNADEPVAKSSETDRDQEGDKDHSSGSDISEATI-- 146
Query: 579 IGSVGENAVLRRAECWKANSEDVKIAG 659
+NA+++RA ++ NSE + + G
Sbjct: 147 -----KNAIVKRASYFRENSETITLQG 168
>07_03_1390 + 26217623-26218370,26218435-26218934
Length = 415
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = -3
Query: 388 SQLSSTRAPWFLSNLTATNPWRAVLPANLV------AFAHPIAW 275
S+ ST A W L NL + P ++LP N+V F HP A+
Sbjct: 335 SKSVSTNADWKLENLWVSQPTPSMLPPNIVYLIARAEFMHPKAY 378
>09_04_0640 -
19166953-19167285,19167631-19168449,19169057-19169163,
19170070-19170154
Length = 447
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 348 FDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFK 458
F+K+ L E CETDF++K D K + +FK
Sbjct: 101 FNKDTLGLDEHVCETDFISKVDHILKRHSGTCVKTFK 137
>03_04_0089 - 17217235-17217461,17218298-17218418
Length = 115
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -3
Query: 349 NLTATNPWRAVLPANLVAFAHPIAWACSWSHVSALSASLLCISNAFLQLAIV*PVFSRSL 170
N TA + RAVLP N V+ A P+A + + + + LC+ + L ++ + +F R
Sbjct: 9 NATAFSLSRAVLPINAVSPAPPVAVQAAATSAVSTNRHTLCLLS--LSISCLPTIFCRRS 66
Query: 169 AS 164
A+
Sbjct: 67 AA 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,794,880
Number of Sequences: 37544
Number of extensions: 482976
Number of successful extensions: 1294
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -