Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_G24
(810 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78198-4|CAB01570.1| 316|Caenorhabditis elegans Hypothetical pr... 144 7e-35
D87850-1|BAA13470.1| 316|Caenorhabditis elegans elongation fact... 144 7e-35
CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical ... 32 0.56
Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi... 29 5.2
AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna ... 29 5.2
>Z78198-4|CAB01570.1| 316|Caenorhabditis elegans Hypothetical
protein F55C5.5 protein.
Length = 316
Score = 144 bits (349), Expect = 7e-35
Identities = 85/222 (38%), Positives = 128/222 (57%), Gaps = 5/222 (2%)
Frame = +3
Query: 144 KAAESSLLAKLREKTGYTIANCKKAL-EMHNNDADKAETWLHEQAQAMGWAKATKLAGRT 320
K ++ +L+A LR+KTGY+ NC+KAL + ND D A WL E A GWAKA KL R
Sbjct: 24 KVSKEALMA-LRKKTGYSYVNCRKALIQFGENDMDSAVKWLKEAAAKEGWAKAAKLGTRV 82
Query: 321 ALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITK 500
GLV+V D + A+VEL+CETDFVA++ F+ ++ + I++ A K Q+ +K
Sbjct: 83 TSNGLVSVVTDNSTAAVVELSCETDFVARSGAFKDLLSN--ISNSVLAKAKPQSISSGSK 140
Query: 501 MELDSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPX 680
++ + LG L GK + E+L+L IG +GEN +RR + +KA E + G +HP
Sbjct: 141 LQEFTYDLGDLTDSDGKNMREVLSLSIGKLGENMTVRRVKAFKA-PEGTTLFGASHP-KD 198
Query: 681 XXXXXXXGKYGALLAYKQ--PNDV--XDIGRQLCQHIVGCAP 794
G++ +L+A Q P + + Q+CQHI+G +P
Sbjct: 199 GTDDIPMGRFISLIALNQSSPGSISSQQLAGQICQHIIGMSP 240
>D87850-1|BAA13470.1| 316|Caenorhabditis elegans elongation factor
Ts homologue protein.
Length = 316
Score = 144 bits (349), Expect = 7e-35
Identities = 85/222 (38%), Positives = 128/222 (57%), Gaps = 5/222 (2%)
Frame = +3
Query: 144 KAAESSLLAKLREKTGYTIANCKKAL-EMHNNDADKAETWLHEQAQAMGWAKATKLAGRT 320
K ++ +L+A LR+KTGY+ NC+KAL + ND D A WL E A GWAKA KL R
Sbjct: 24 KVSKEALMA-LRKKTGYSYVNCRKALIQFGENDMDSAVKWLKEAAAKEGWAKAAKLGTRV 82
Query: 321 ALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITK 500
GLV+V D + A+VEL+CETDFVA++ F+ ++ + I++ A K Q+ +K
Sbjct: 83 TSNGLVSVVTDNSTAAVVELSCETDFVARSGAFKDLLSN--ISNSVLAKAKPQSISSGSK 140
Query: 501 MELDSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPX 680
++ + LG L GK + E+L+L IG +GEN +RR + +KA E + G +HP
Sbjct: 141 LQEFTYDLGDLTDSDGKNMREVLSLSIGKLGENMTVRRVKAFKA-PEGTTLFGASHP-KD 198
Query: 681 XXXXXXXGKYGALLAYKQ--PNDV--XDIGRQLCQHIVGCAP 794
G++ +L+A Q P + + Q+CQHI+G +P
Sbjct: 199 GTDDIPMGRFISLIALNQSSPGSISSQQLAGQICQHIIGMSP 240
>CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical
protein C50E10.5 protein.
Length = 361
Score = 31.9 bits (69), Expect = 0.56
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -3
Query: 382 LSSTRAPWFLSNLTATNPWRAVLPANLVAFAHPIA----WACSWSHVSALSASLLCISNA 215
L T A WF+ + T+ WR + A L+ F H I W C ++H++ ++C
Sbjct: 148 LERTFASWFILDYERTSRWR-IFRA-LLIFQHGIIFVMHWFCFFNHINFFLGFIVCF--L 203
Query: 214 FLQLAIV 194
F+ LA+V
Sbjct: 204 FIILAVV 210
>Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical
protein R11A5.7 protein.
Length = 664
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 619 SAGKRTARMSRSQVIPIQRLAVLVIIPLENMGPCSLTNSQTTXKTSAGNYASTSSAVXPT 798
S+G T+R + S + ++ + ++ + G S T S TT KTS + ++TS A P+
Sbjct: 486 SSGSNTSRKTISDLQMRKQQYRMRLLASQAAG--STTRSTTTLKTSTTSVSTTSEATSPS 543
Query: 799 K 801
K
Sbjct: 544 K 544
>AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi
enabling proteinSID-1 protein.
Length = 776
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -2
Query: 401 HKISFTVEFHQSTMVLVKLNSYQPLEGRPAS*FSCLCPSHCLGLFMEPCLSLICIIIM 228
H+ S ++ T++ V + + L+ ++ + +CPS F PC+ +IC ++M
Sbjct: 507 HEYSHVFGTYECTLLDVTIGVFMVLQSIASATYH-ICPSDVAFQFDTPCIQVICGLLM 563
>AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna
interference defectiveprotein 1 protein.
Length = 776
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -2
Query: 401 HKISFTVEFHQSTMVLVKLNSYQPLEGRPAS*FSCLCPSHCLGLFMEPCLSLICIIIM 228
H+ S ++ T++ V + + L+ ++ + +CPS F PC+ +IC ++M
Sbjct: 507 HEYSHVFGTYECTLLDVTIGVFMVLQSIASATYH-ICPSDVAFQFDTPCIQVICGLLM 563
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,244,675
Number of Sequences: 27780
Number of extensions: 414306
Number of successful extensions: 1186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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