Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_G19
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34070.1 68417.m04834 expressed protein                             28   4.8  
At1g56100.1 68414.m06442 pectinesterase inhibitor domain-contain...    28   6.4  
At1g54270.1 68414.m06187 eukaryotic translation initiation facto...    28   6.4  
At4g00580.1 68417.m00081 COP1-interacting protein-related simila...    27   8.4  
At3g13920.1 68416.m01758 eukaryotic translation initiation facto...    27   8.4  
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)...    27   8.4  

>At4g34070.1 68417.m04834 expressed protein
          Length = 363

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 482 LKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 610
           L +DSV    L+L  E  W + G L +      K+++ S+LHG
Sbjct: 302 LYEDSVSSDRLLLKKEYAWHIGGALPHHELVEWKLLYRSSLHG 344


>At1g56100.1 68414.m06442 pectinesterase inhibitor domain-containing
           protein contains TIGRFAM TIGR01614: pectinesterase
           inhibitor domain; contains weak hit to Pfam PF04043:
           Plant invertase/pectin methylesterase inhibitor
          Length = 232

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 449 DNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKEND 580
           DNLL E  +    DD+ + GI+ ++N     +  +   +LKE D
Sbjct: 118 DNLLAELNQT--TDDAEKEGIIDVVNATSEAIENETEVDLKEKD 159


>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
           4A-2 / eIF-4A-2 similar to eukaryotic translation
           initiation factor 4A GI:19696 from [Nicotiana
           plumbaginifolia]
          Length = 412

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 350 VKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVEREELFL 484
           VKR E+TL  +K F  + +  +W L E L  L + L + +  +F+
Sbjct: 242 VKRDELTLEGIKQFYVNVEKEDWKL-ETLCDLYETLAITQSVIFV 285


>At4g00580.1 68417.m00081 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646
          Length = 317

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 449 DNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKEND 580
           DNLL E  +    DD+ + GI+ L+N     +  +    +KE D
Sbjct: 203 DNLLAELNQT--SDDAEKEGIIGLVNATSEAIENETEMSVKEKD 244


>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
           4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
           contains Pfam profile PF00270: DEAD/DEAH box helicase;
           contains Pfam profile PF00271: Helicase conserved
           C-terminal domain
          Length = 412

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 350 VKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVEREELFL 484
           VKR E+TL  +K F  + +   W L E L  L + L + +  +F+
Sbjct: 242 VKRDELTLEGIKQFYVNVEKEEWKL-ETLCDLYETLAITQSVIFV 285


>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
           Similar to Arabidopsis luminal binding protein
           (gb|D89342); contains Pfam domain PF00012: dnaK protein
          Length = 678

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 398 DSQNLNWTLKELLIWLKDNLLVEREE 475
           D + +   LKE L WL++N+  E+E+
Sbjct: 612 DKEKMEGVLKEALEWLEENVNAEKED 637


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,999,787
Number of Sequences: 28952
Number of extensions: 215102
Number of successful extensions: 522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)