Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_G18
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377...    35   0.068
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368...    34   0.16 
05_06_0189 + 26257587-26257791,26257962-26258003,26258064-262584...    33   0.36 
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897...    32   0.63 
12_01_0630 - 5203802-5204111,5204896-5204900                           29   4.4  
12_02_0373 + 18245137-18245360,18245579-18245684                       28   7.8  

>01_05_0619 -
           23737178-23737378,23737460-23737516,23737597-23737755,
           23739477-23739621,23739725-23740136,23740693-23740855
          Length = 378

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = +1

Query: 673 REFDRRSGSDKTGVKSVDKREGAGPHNWGTIKDD 774
           R ++RRSG   TG     KREGAG  NWGT+ D+
Sbjct: 158 RAYERRSG---TGRGYGMKREGAGRGNWGTVTDE 188


>05_07_0310 +
           29135875-29136052,29136206-29136617,29136723-29136867,
           29137944-29138102,29138183-29138242,29138349-29138546
          Length = 383

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +1

Query: 664 RGKREFDRRSGSDKTGVKSVDKREGAGPHNWGTIKDD 774
           R +R ++R SG   TG     KREG+G  NWGT+ D+
Sbjct: 160 RPRRAYERHSG---TGRGYELKREGSGRGNWGTVTDE 193


>05_06_0189 +
           26257587-26257791,26257962-26258003,26258064-26258436,
           26258515-26258656,26259356-26259514,26259599-26259661,
           26259992-26260180
          Length = 390

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 658 DNRGKREFDRRSGSDKTGVKSVDKREGAGPHNWGTIKDDL 777
           +   +R ++R SG   TG     KREG+G  NWGT  D++
Sbjct: 168 ERMSRRPYERHSG---TGRGYEMKREGSGRGNWGTTTDEI 204


>01_06_0541 -
           30088910-30089107,30089421-30089477,30089563-30089721,
           30090639-30090777,30090863-30091247,30091612-30091816
          Length = 380

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 670 KREFDRRSGSDKTGVKSVDKREGAGPHNWGTIKDD 774
           +R ++R SG   TG     KR+GAG  NWGT  D+
Sbjct: 162 RRNYERHSG---TGRGYEMKRDGAGRGNWGTATDE 193


>12_01_0630 - 5203802-5204111,5204896-5204900
          Length = 104

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 748 GDLRPPSCRLISHRFCQSR 692
           G LRPPSCR IS R+   R
Sbjct: 12  GTLRPPSCRAISRRYRSPR 30


>12_02_0373 + 18245137-18245360,18245579-18245684
          Length = 109

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 797 PVLFNSSRSSLIVPQLWGPAPSLL 726
           PV+  +  ++ ++P+LWGP PSLL
Sbjct: 39  PVVMENDGAA-VLPRLWGPPPSLL 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,976,235
Number of Sequences: 37544
Number of extensions: 371683
Number of successful extensions: 764
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)