Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_G18
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    57   2e-08
U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical...    28   7.0  
Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   9.2  

>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
 Frame = +1

Query: 673 REFDRRSGSDKTGVKSVDKREGAGPHNWGTIKDDL-DELNKTGSEG-ETTE 819
           R+FDR+SGSD+TGV+S DK++G G  NWG  KD+L  E      EG E+TE
Sbjct: 178 RQFDRQSGSDRTGVRSFDKKDGHGKGNWGDQKDELAGETENIAPEGAESTE 228


>U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical
           protein T12C9.7 protein.
          Length = 419

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -1

Query: 802 QNRFCSTRRDRP*LCPSCGDLRPPSCRLISHRFCQSRIFGRTHVCLYC 659
           + + C+ +R  P L P+C +L+P   ++        +  G +++  YC
Sbjct: 49  EKKQCTKKRQLPSLAPACEELQPKKSKVTEETVASQKTHGLSNLDDYC 96


>AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical
           protein F53G12.4 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 761 VPQLWGPAPSLLSTDFTPVLSEP-DLRSNSRLPLLS 657
           +P  WGP+ S L TD     S+P     N+ LP LS
Sbjct: 168 IPNAWGPSKSALVTDDVASTSDPLPAIFNAHLPPLS 203


>Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical
           protein K02B12.8 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -1

Query: 760 CPSCGDLRPPSCRLIS---HRFCQSRIFGRTHVCLYCQKN 650
           C  C + +PP    IS   H FC         VCL C+KN
Sbjct: 6   CNKCFNRKPPDGFFISSCFHIFCTKCAKADLAVCLICKKN 45


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
            protein Y73F8A.5 protein.
          Length = 1019

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 449  RVVVKIGRRTVPQKTRKELRGHRD 520
            RV+   GRR+ P  +R  LR HR+
Sbjct: 983  RVIFSKGRRSAPNNSRTTLRDHRE 1006


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.310    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,233,195
Number of Sequences: 27780
Number of extensions: 299101
Number of successful extensions: 598
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)