Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_G16
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   7.5  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    25   9.9  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   9.9  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   9.9  

>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 593 FKSYPEANWGSWLCVQICCVLMWNHFGTNA 504
           FK + E N  +W+ + +  V++ N FG  A
Sbjct: 181 FKFWTEINSAAWISIFLAVVIVINLFGVRA 210


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 562 VGSVYRYVAS*CGTTSEPMPGFLKIYMLCTT 470
           VG+ + +V S C     P  GFL  Y+L TT
Sbjct: 157 VGTGFSFVWSACVAILFPFVGFLVTYVLSTT 187


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 21/89 (23%), Positives = 36/89 (40%)
 Frame = +1

Query: 316 PSTPMEILQSNRRFH*TRSVTHCISYIRFSDVTRIVNA*RAFAKSLALSSRLWCKACIFL 495
           PST +++L S R      +  + IS I  + V +     +     L+ + R+   AC   
Sbjct: 322 PSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTF 381

Query: 496 RTLALVPKWFHIKTQHICTQSQLPQLASG 582
           R+ A+     H+K       S +   A G
Sbjct: 382 RSGAIEQLGVHVKNLQSLKGSSIELFAQG 410


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 84  IMHDSIKSQWITDGYAILXDFLHVAECDEIXAAGLEFTENLPD 212
           I H S  +QW   GY    +++++ E   + A  LE TE L D
Sbjct: 658 IFHGSTIAQWRNAGYQEQPEYVNLKEL--LLAPRLEVTELLAD 698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,288
Number of Sequences: 5004
Number of extensions: 64232
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)