Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_G16
(826 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC053853-1|AAH53853.1| 291|Homo sapiens PHYHD1 protein protein. 195 2e-49
AL672142-6|CAI10842.1| 291|Homo sapiens phytanoyl-CoA dioxygena... 195 2e-49
BC051300-1|AAH51300.1| 270|Homo sapiens PHYHD1 protein protein. 150 7e-36
AL672142-5|CAI10841.1| 255|Homo sapiens phytanoyl-CoA dioxygena... 150 7e-36
AL672142-4|CAI10840.1| 177|Homo sapiens phytanoyl-CoA dioxygena... 143 8e-34
BC009373-1|AAH09373.1| 297|Homo sapiens phytanoyl-CoA dioxygena... 109 2e-23
AL672142-7|CAI10843.1| 297|Homo sapiens phytanoyl-CoA dioxygena... 109 2e-23
AK024725-1|BAB14975.1| 556|Homo sapiens protein ( Homo sapiens ... 31 6.7
>BC053853-1|AAH53853.1| 291|Homo sapiens PHYHD1 protein protein.
Length = 291
Score = 195 bits (475), Expect = 2e-49
Identities = 104/242 (42%), Positives = 136/242 (56%), Gaps = 7/242 (2%)
Frame = +3
Query: 120 DGYAILXDFLHVAECDEIXAAGLEFTENLPDXXE-RATFSTTEKTHLKDK----YFLESN 284
DG+ +L FL EC + E + R FST E+ L+ + YFL S
Sbjct: 15 DGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSG 74
Query: 285 DKIRCFFEEGAIDADGNLTVEPEISLNKVGHALHLLHPIFRCYTYSERVKSICKELGFIE 464
DKIR FFE+G D GN V PE S+NK+GHALH P+F+ T+S +V+++ + LG
Sbjct: 75 DKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQM 134
Query: 465 PAVVQSMYIFKNPGIGSEVVPHQDATYLYTEPTPPV-GFWIALEEATVQNGCLWLXXXXX 641
P VVQSMYIFK P G EV PHQDA++LYTEP V G WIA+E+AT++NGCLW
Sbjct: 135 PVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSH 194
Query: 642 XXXXXXXLIRNP-DEDSDEALIYDKPAAVYPQSSFTPIPVSKGTCILLHGNVVHXSSHNK 818
++R P + + +PA S F P PV +G +L+HG VVH S N
Sbjct: 195 TSGVSRRMVRAPVGSAPGTSFLGSEPAR--DNSLFVPTPVQRGALVLIHGEVVHKSKQNL 252
Query: 819 SD 824
SD
Sbjct: 253 SD 254
>AL672142-6|CAI10842.1| 291|Homo sapiens phytanoyl-CoA dioxygenase
domain containing 1 protein.
Length = 291
Score = 195 bits (475), Expect = 2e-49
Identities = 104/242 (42%), Positives = 136/242 (56%), Gaps = 7/242 (2%)
Frame = +3
Query: 120 DGYAILXDFLHVAECDEIXAAGLEFTENLPDXXE-RATFSTTEKTHLKDK----YFLESN 284
DG+ +L FL EC + E + R FST E+ L+ + YFL S
Sbjct: 15 DGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSG 74
Query: 285 DKIRCFFEEGAIDADGNLTVEPEISLNKVGHALHLLHPIFRCYTYSERVKSICKELGFIE 464
DKIR FFE+G D GN V PE S+NK+GHALH P+F+ T+S +V+++ + LG
Sbjct: 75 DKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQM 134
Query: 465 PAVVQSMYIFKNPGIGSEVVPHQDATYLYTEPTPPV-GFWIALEEATVQNGCLWLXXXXX 641
P VVQSMYIFK P G EV PHQDA++LYTEP V G WIA+E+AT++NGCLW
Sbjct: 135 PVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSH 194
Query: 642 XXXXXXXLIRNP-DEDSDEALIYDKPAAVYPQSSFTPIPVSKGTCILLHGNVVHXSSHNK 818
++R P + + +PA S F P PV +G +L+HG VVH S N
Sbjct: 195 TSGVSRRMVRAPVGSAPGTSFLGSEPAR--DNSLFVPTPVQRGALVLIHGEVVHKSKQNL 252
Query: 819 SD 824
SD
Sbjct: 253 SD 254
>BC051300-1|AAH51300.1| 270|Homo sapiens PHYHD1 protein protein.
Length = 270
Score = 150 bits (363), Expect = 7e-36
Identities = 92/242 (38%), Positives = 122/242 (50%), Gaps = 7/242 (2%)
Frame = +3
Query: 120 DGYAILXDFLHVAECDEIXAAGLEFTENLPDXXE-RATFSTTEKTHLKDK----YFLESN 284
DG+ +L FL EC + E + R FST E+ L+ + YFL S
Sbjct: 15 DGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSG 74
Query: 285 DKIRCFFEEGAIDADGNLTVEPEISLNKVGHALHLLHPIFRCYTYSERVKSICKELGFIE 464
DKIR FFE+G D GN V PE S+NK+GHALH P+F+ T+S +V+
Sbjct: 75 DKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQQ--------- 125
Query: 465 PAVVQSMYIFKNPGIGSEVVPHQDATYLYTEPTPPV-GFWIALEEATVQNGCLWLXXXXX 641
P G EV PHQDA++LYTEP V G WIA+E+AT++NGCLW
Sbjct: 126 ------------PHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSH 173
Query: 642 XXXXXXXLIRNPDEDSD-EALIYDKPAAVYPQSSFTPIPVSKGTCILLHGNVVHXSSHNK 818
++R P + + + +PA S F P PV +G +L+HG VVH S N
Sbjct: 174 TSGVSRRMVRAPVGSAPGTSFLGSEPAR--DNSLFVPTPVQRGALVLIHGEVVHKSKQNL 231
Query: 819 SD 824
SD
Sbjct: 232 SD 233
>AL672142-5|CAI10841.1| 255|Homo sapiens phytanoyl-CoA dioxygenase
domain containing 1 protein.
Length = 255
Score = 150 bits (363), Expect = 7e-36
Identities = 92/242 (38%), Positives = 122/242 (50%), Gaps = 7/242 (2%)
Frame = +3
Query: 120 DGYAILXDFLHVAECDEIXAAGLEFTENLPDXXE-RATFSTTEKTHLKDK----YFLESN 284
DG+ +L FL EC + E + R FST E+ L+ + YFL S
Sbjct: 15 DGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSG 74
Query: 285 DKIRCFFEEGAIDADGNLTVEPEISLNKVGHALHLLHPIFRCYTYSERVKSICKELGFIE 464
DKIR FFE+G D GN V PE S+NK+GHALH P+F+ T+S +V+
Sbjct: 75 DKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQQ--------- 125
Query: 465 PAVVQSMYIFKNPGIGSEVVPHQDATYLYTEPTPPV-GFWIALEEATVQNGCLWLXXXXX 641
P G EV PHQDA++LYTEP V G WIA+E+AT++NGCLW
Sbjct: 126 ------------PHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSH 173
Query: 642 XXXXXXXLIRNPDEDSD-EALIYDKPAAVYPQSSFTPIPVSKGTCILLHGNVVHXSSHNK 818
++R P + + + +PA S F P PV +G +L+HG VVH S N
Sbjct: 174 TSGVSRRMVRAPVGSAPGTSFLGSEPAR--DNSLFVPTPVQRGALVLIHGEVVHKSKQNL 231
Query: 819 SD 824
SD
Sbjct: 232 SD 233
>AL672142-4|CAI10840.1| 177|Homo sapiens phytanoyl-CoA dioxygenase
domain containing 1 protein.
Length = 177
Score = 143 bits (346), Expect = 8e-34
Identities = 76/163 (46%), Positives = 97/163 (59%), Gaps = 6/163 (3%)
Frame = +3
Query: 120 DGYAILXDFLHVAECDEIXAAGLEFTENLPDXXE-RATFSTTEKTHLKDK----YFLESN 284
DG+ +L FL EC + E + R FST E+ L+ + YFL S
Sbjct: 15 DGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSG 74
Query: 285 DKIRCFFEEGAIDADGNLTVEPEISLNKVGHALHLLHPIFRCYTYSERVKSICKELGFIE 464
DKIR FFE+G D GN V PE S+NK+GHALH P+F+ T+S +V+++ + LG
Sbjct: 75 DKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQM 134
Query: 465 PAVVQSMYIFKNPGIGSEVVPHQDATYLYTEPTPPV-GFWIAL 590
P VVQSMYIFK P G EV PHQDA++LYTEP V G WIA+
Sbjct: 135 PVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAV 177
>BC009373-1|AAH09373.1| 297|Homo sapiens phytanoyl-CoA dioxygenase
domain containing 1 protein.
Length = 297
Score = 109 bits (261), Expect = 2e-23
Identities = 58/133 (43%), Positives = 77/133 (57%), Gaps = 5/133 (3%)
Frame = +3
Query: 120 DGYAILXDFLHVAECDEIXAAGLEFTENLPDXXE-RATFSTTEKTHLKDK----YFLESN 284
DG+ +L FL EC + E + R FST E+ L+ + YFL S
Sbjct: 15 DGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSG 74
Query: 285 DKIRCFFEEGAIDADGNLTVEPEISLNKVGHALHLLHPIFRCYTYSERVKSICKELGFIE 464
DKIR FFE+G D GN V PE S+NK+GHALH P+F+ T+S +V+++ + LG
Sbjct: 75 DKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQM 134
Query: 465 PAVVQSMYIFKNP 503
P VVQSMYIFK+P
Sbjct: 135 PVVVQSMYIFKSP 147
>AL672142-7|CAI10843.1| 297|Homo sapiens phytanoyl-CoA dioxygenase
domain containing 1 protein.
Length = 297
Score = 109 bits (261), Expect = 2e-23
Identities = 58/133 (43%), Positives = 77/133 (57%), Gaps = 5/133 (3%)
Frame = +3
Query: 120 DGYAILXDFLHVAECDEIXAAGLEFTENLPDXXE-RATFSTTEKTHLKDK----YFLESN 284
DG+ +L FL EC + E + R FST E+ L+ + YFL S
Sbjct: 15 DGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSG 74
Query: 285 DKIRCFFEEGAIDADGNLTVEPEISLNKVGHALHLLHPIFRCYTYSERVKSICKELGFIE 464
DKIR FFE+G D GN V PE S+NK+GHALH P+F+ T+S +V+++ + LG
Sbjct: 75 DKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQM 134
Query: 465 PAVVQSMYIFKNP 503
P VVQSMYIFK+P
Sbjct: 135 PVVVQSMYIFKSP 147
>AK024725-1|BAB14975.1| 556|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21072 fis, clone CAS01959. ).
Length = 556
Score = 30.7 bits (66), Expect = 6.7
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 586 LLKKPQFKTAVCGCLEALTGQECTDV*SA---TQMKTVTRL*SMINLQRFIHNLALHPYR 756
LL++ + A C C G CTD +A Q + T L ++ NL F+ +A+ +R
Sbjct: 317 LLRRHSYLYASCSCKAGWRGWSCTDNSTAQTVAQQRAATLLLTLSNLM-FLAPIAVSVWR 375
Query: 757 FRKERVYYYTATLY 798
F Y T++
Sbjct: 376 FFLVEASVYAYTMF 389
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,908,358
Number of Sequences: 237096
Number of extensions: 2355680
Number of successful extensions: 9206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9189
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -