Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_G14
         (584 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   3.3  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   3.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.7  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 392 SYDFQFFNHSSFITEXLF 339
           +YD QF+ H++ I   LF
Sbjct: 258 TYDKQFYIHNALIVRALF 275


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 392 SYDFQFFNHSSFITEXLF 339
           +YD QF+ H++ I   LF
Sbjct: 254 TYDKQFYIHNALIVRALF 271


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 144 GHRIKALTVSANEGFVRAALQQGVTY 221
           G+   ALT    +GF R ++ +   Y
Sbjct: 197 GYHYNALTCEGCKGFFRRSITKNAVY 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,713
Number of Sequences: 336
Number of extensions: 2158
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)