Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_G12
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 231 7e-62
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 203 1e-53
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 123 2e-29
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 100 2e-22
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 97 2e-21
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 93 3e-20
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 91 1e-19
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 87 2e-18
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 83 4e-17
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 79 6e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 77 1e-15
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 75 7e-15
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 74 1e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 73 2e-14
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 73 4e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 72 5e-14
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 69 4e-13
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 66 2e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 54 1e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 50 2e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 50 2e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 1e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 38 0.001
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 1.9
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 27 2.5
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 3.2
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 3.2
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 4.3
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 25 5.7
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 7.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 7.5
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.9
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 9.9
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 9.9
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 9.9
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 231 bits (564), Expect = 7e-62
Identities = 106/147 (72%), Positives = 126/147 (85%)
Frame = +1
Query: 112 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIA 291
E + NVE TSEDV + +F+ M L+++LLRGIY YG+E PSA+Q R+I+ I KGRDVIA
Sbjct: 4 EIMENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIA 63
Query: 292 QAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHAC 471
QAQSGTGKTATFSI ILQ++D ++R+TQ LILSPTRELA QIQ V+LALGD MNVQCHAC
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHAC 123
Query: 472 IGGTNLGEDIRKLDYGQHVVSGTPGRV 552
IGGT++G DI+KLDYGQHVVSGTPGRV
Sbjct: 124 IGGTSVGNDIKKLDYGQHVVSGTPGRV 150
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 203 bits (496), Expect = 1e-53
Identities = 98/147 (66%), Positives = 120/147 (81%)
Frame = +1
Query: 112 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIA 291
+ L + +T+ D EVI TFD M L+ ELLRGIY YGFE+PSAIQQR+I+PI+ RDV+A
Sbjct: 3 DQLEDSVIETNYD-EVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLA 61
Query: 292 QAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHAC 471
QAQSGTGKTATFSIS+LQ +DT+L++ Q LIL+PTRELA QIQKV++ALGD MNV+CHAC
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHAC 121
Query: 472 IGGTNLGEDIRKLDYGQHVVSGTPGRV 552
IGGT + +D+ L G HVV GTPGRV
Sbjct: 122 IGGTLVRDDMAALQAGVHVVVGTPGRV 148
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 123 bits (297), Expect = 2e-29
Identities = 64/128 (50%), Positives = 84/128 (65%)
Frame = +1
Query: 169 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 348
F+ L+ ELL GI+ GFE+PS IQ+ SI + GRD++A+A++GTGKTA F I L+
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 349 LDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHV 528
+DT + Q LIL PTRELA Q +V LG MNV+ GGT L +DI +L+ H+
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHI 165
Query: 529 VSGTPGRV 552
V GTPGRV
Sbjct: 166 VVGTPGRV 173
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 100 bits (239), Expect = 2e-22
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Frame = +1
Query: 169 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 348
F SMGL LLR I+ GF+ P+ IQ+++I +++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 349 LDTTL--RETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ 522
L +TL T+ LILSP RELA Q KV+ +++ A +GG +L E L
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKP 190
Query: 523 HVVSGTPGR 549
+V TPGR
Sbjct: 191 DIVVATPGR 199
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 96.7 bits (230), Expect = 2e-21
Identities = 53/160 (33%), Positives = 97/160 (60%), Gaps = 2/160 (1%)
Frame = +1
Query: 79 SEVSSNRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSI 258
S + N+ + L++++ D + + + +F+ + L+ ELL+GIY+ F+KPS IQ++++
Sbjct: 86 SNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
Query: 259 LPIVKG--RDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQKVIL 432
++ R++I Q+QSGTGKTA F++++L +D ++ + Q + L+P+RELA QI V+
Sbjct: 146 PLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVT 205
Query: 433 ALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRV 552
+G + V+ G + K+D +V GTPG V
Sbjct: 206 EMGKYTEVK--TAFGIKDSVPKGAKID--AQIVIGTPGTV 241
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 92.7 bits (220), Expect = 3e-20
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Frame = +1
Query: 64 RKMTSSEVSS--NRKI-----LSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYG 222
+K+T + +S N+KI SE S S++ E TF +G+ DEL G
Sbjct: 6 KKLTEDKKNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLG 65
Query: 223 FEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRE 402
F+ P+ IQQ +I ++ RDVI AQ+G+GKTA F++ ++Q L ++L+PTRE
Sbjct: 66 FKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRE 125
Query: 403 LATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRV 552
LA QI + A+G + V+ +GG ++ L HV+ TPGR+
Sbjct: 126 LAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRL 175
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 90.6 bits (215), Expect = 1e-19
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
Frame = +1
Query: 166 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 345
+F SM L +L+G+ GFE P+ IQ ++I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 346 TL---DTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDY 516
L + T+VLIL PTRELA Q V + F ++ CIGG +L ++L
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 517 GQHVVSGTPGR 549
+V TPGR
Sbjct: 380 RPDIVIATPGR 390
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 87.0 bits (206), Expect = 2e-18
Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Frame = +1
Query: 184 LRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL 363
L+ ELLR I GFE PS +QQ I + G DV+ QA+SG GKTA F +S LQ ++
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117
Query: 364 RETQVLILSPTRELATQIQKVILALGDFM-NVQCHACIGGTNLGEDI---RKLDYGQHVV 531
E VL+L TRELA QI+ ++ +V+ GG N+ +D+ + H+V
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 532 SGTPGRV 552
TPGR+
Sbjct: 178 VATPGRL 184
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 82.6 bits (195), Expect = 4e-17
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Frame = +1
Query: 124 NVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQS 303
N+ ++ D+E F + L + + + I GFE + IQ+RSI P++ GRDV+ A++
Sbjct: 79 NLNASSTSDIE---KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKT 135
Query: 304 GTGKTATF---SISILQTLDTTLRE-TQVLILSPTRELATQIQKVILALGDFMNVQCHAC 471
G+GKT F +I +L L R T V+I+SPTRELA QI V L + +
Sbjct: 136 GSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIV 195
Query: 472 IGGTNLGEDIRKLDYGQHVVSGTPGRV 552
IGG N + KL G +++ TPGR+
Sbjct: 196 IGGANRRAEADKLVKGVNLLVATPGRL 222
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 78.6 bits (185), Expect = 6e-16
Identities = 44/129 (34%), Positives = 71/129 (55%)
Frame = +1
Query: 166 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 345
+F +G+ L+ + +P+ IQ+ I I++GR+ I A++G+GKTA F++ I++
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 346 TLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQH 525
LIL+PTRELA QI + ALG +N++ +GG ++ L H
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPH 127
Query: 526 VVSGTPGRV 552
VV TPGR+
Sbjct: 128 VVVATPGRL 136
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 77.4 bits (182), Expect = 1e-15
Identities = 47/159 (29%), Positives = 87/159 (54%), Gaps = 8/159 (5%)
Frame = +1
Query: 100 KILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGR 279
+IL ED N+ + + ++ GL E+L+ + +++PS+IQ+ +I +++ +
Sbjct: 229 RILKEDY-NISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
Query: 280 DVIAQAQSGTGKTATFSISILQTLD--TTLRETQV------LILSPTRELATQIQKVILA 435
D+I A++G+GKTA F I ++ + L E+ + ++L+PTRELA QIQ
Sbjct: 288 DLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNK 347
Query: 436 LGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRV 552
+ + +C + +GG E ++ G H+V TPGR+
Sbjct: 348 FAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRL 386
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 74.9 bits (176), Expect = 7e-15
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
Frame = +1
Query: 160 IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISI 339
+ ++ GL + + I + G+EKP++IQ ++I I GRDVI A++G+GKT F + +
Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPM 476
Query: 340 LQTL-DTTLRETQ----VLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIR 504
+ + D +T +I++PTRELA QI + +N++ GG + + I
Sbjct: 477 FRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIA 536
Query: 505 KLDYGQHVVSGTPGRV 552
L G +V TPGR+
Sbjct: 537 DLKRGAEIVVCTPGRM 552
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 74.1 bits (174), Expect = 1e-14
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Frame = +1
Query: 160 IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISI 339
+ TF+ G + +L+ + GFE P+ IQQ++ + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 340 L-----QTLDTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIR 504
+ Q L + VL+L+PTRELA QIQ+ G ++ GG G IR
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 505 KLDYGQHVVSGTPGRV 552
L G + TPGR+
Sbjct: 241 DLIRGVEICIATPGRL 256
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 73.3 bits (172), Expect = 2e-14
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Frame = +1
Query: 76 SSEVSSNRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRS 255
+ E + +R I ++S + +SE++ I FD + + +L G+ Y ++P+ IQ +
Sbjct: 138 NDEEAYDRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKNY--KEPTPIQAAT 195
Query: 256 ILPIVKGRDVIAQAQSGTGKTATFSISILQTLD---TTLRETQVLILSPTRELATQIQKV 426
++ GRDV+ A++G+GKT F I LQ L+ +VL++SPTRELA Q +
Sbjct: 196 WPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYEN 255
Query: 427 ILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRV 552
+ +L N++ GG E R V+ GTPGR+
Sbjct: 256 LNSLIQGTNLKAVVVYGGAPKSEQARAAK-NASVIIGTPGRL 296
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 72.5 bits (170), Expect = 4e-14
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
Frame = +1
Query: 166 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 345
TF L L R I+ FEKP+++Q +I ++G+D++AQA++G+GKTA + I IL+
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 346 TL------DTTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRK 507
L D R L+L PTRELA Q+ V+ L F + TN + +++
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQR 134
Query: 508 ---LDYGQHVVSGTPGR 549
LD +V TP R
Sbjct: 135 PLLLDL-PDIVIATPSR 150
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 72.1 bits (169), Expect = 5e-14
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Frame = +1
Query: 67 KMTS--SEVSSNRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSA 240
+MTS S+V+S L + S V+V + L E+L + GF KP
Sbjct: 89 EMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDV-SAWAHFSLSPEMLGSLSKAGFSKPMP 147
Query: 241 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ--TLDTTLRETQVLILSPTRELATQ 414
IQ I G D+I +A +G+GKT F I IL+ + + Q L+++PTRELA Q
Sbjct: 148 IQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQ 207
Query: 415 IQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRV 552
I + + N++ + GG + + R L+ HVV TPGR+
Sbjct: 208 ICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRL 253
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 69.3 bits (162), Expect = 4e-13
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 18/153 (11%)
Frame = +1
Query: 148 DVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATF 327
D+E + F S L LL+ I G+ +P+ +Q+ SI + GRD++A AQ+G+GKTA F
Sbjct: 164 DIEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGF 223
Query: 328 SISIL--------------QTLDTTLRETQ----VLILSPTRELATQIQKVILALGDFMN 453
IL Q R + LIL+PTREL QI +
Sbjct: 224 LFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSW 283
Query: 454 VQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRV 552
V+ A GG ++ IR++D G ++S TPGR+
Sbjct: 284 VRPCAVYGGADIRAQIRQIDQGCDLLSATPGRL 316
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 66.5 bits (155), Expect = 2e-12
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 4/156 (2%)
Frame = +1
Query: 97 RKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKG 276
RK E++ + E + F + L + F + IQ++ I +KG
Sbjct: 17 RKEEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKG 76
Query: 277 RDVIAQAQSGTGKTATFSISILQTLD----TTLRETQVLILSPTRELATQIQKVILALGD 444
RD++ A++G+GKT F + +++ L T+L L++SPTRELA Q + ++ +G
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR 136
Query: 445 FMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRV 552
+ IGG N E+ +L +++ TPGR+
Sbjct: 137 LHSFSAGLIIGGNNYKEEKERLS-RMNILVCTPGRL 171
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 54.4 bits (125), Expect = 1e-08
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Frame = +1
Query: 166 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 345
+F S+ + L + GF+K + +Q +I +K +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 346 TL---DTTLRETQVLILSPTRELATQI---QKVILA-----LGDFMNVQCHACIGGT-NL 489
+ DT LI++PTRELATQI K +LA L + IGG L
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 490 GEDIRKL-DYGQHVVSGTPGRV 552
D+ + VV GTPGR+
Sbjct: 122 TNDLASFREKNPSVVIGTPGRL 143
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 50.0 bits (114), Expect = 2e-07
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Frame = +1
Query: 220 GFEKPSAIQQRSILPIVKGRD-VIAQAQSGTGKTATFSISILQTL---DTTLRETQV--L 381
GFEK + +QQR + + + + QA++GTGKT F + + + L +++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 382 ILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ-HVVSGTPGRV 552
ILSPTRELA QI + L ++ IGG + + + G +++ TPGR+
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 50.0 bits (114), Expect = 2e-07
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 13/184 (7%)
Frame = +1
Query: 40 KNLEAN*IRKMTSSEVSSNRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTY 219
+NLE N I + +++ +SN I + + + V+ DT L D L +
Sbjct: 114 QNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQ-------------LADHLNNKM--- 157
Query: 220 GFEKPSAIQQRSILPIVK--GRDVIAQAQSGTGKTATFSISILQ-------TLDTTLRET 372
P+AIQ + ++ +D +AQ+G+GKT + + I+Q L T
Sbjct: 158 NISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGI 217
Query: 373 QVLILSPTRELATQIQKVILALGD----FMNVQCHACIGGTNLGEDIRKLDYGQHVVSGT 540
+I++PTREL QI V L + V C+ IGG + ++ G +++ GT
Sbjct: 218 YAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGT 276
Query: 541 PGRV 552
PGR+
Sbjct: 277 PGRL 280
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.1 bits (92), Expect = 1e-04
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Frame = +1
Query: 235 SAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL-RETQVLILSPTRELAT 411
+ IQ+ +I I RD++A A +G+GKT + ILQ L + + +I++PTREL
Sbjct: 70 TTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCE 129
Query: 412 QI--QKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRV 552
QI Q L+ G + + + E KL + GTP R+
Sbjct: 130 QIYRQAEKLSFGTSLKI-IELSKSNEKIQEKAPKLREKYDMCIGTPMRL 177
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 37.5 bits (83), Expect = 0.001
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +1
Query: 175 SMGLRDELLRGIYTY-GFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL 351
S L EL+ +YT EK Q +I + G VI + +GK+ + I ILQ+L
Sbjct: 292 SRPLSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL 351
Query: 352 DTTLRETQVLILSPTRELATQIQKVILALGDFM 450
+ T + PT+ LA +K ++ + +M
Sbjct: 352 LEDNQSTAFFVF-PTKSLAQDQKKSLIDILSYM 383
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 149 MSKLYPLLTPWDFEMSYCEEYTHMVSKNLQQFSREASCL*SKAEM**LKHNLVQERLRHS 328
MS L L T + FE++ +++ +++K + F + ++ EM L HN+ Q R S
Sbjct: 1124 MSFLVTLQTTYSFELTLNYDFSELLTKVVFPFLSPVDTITAEQEMRDLLHNIRQPLPRSS 1183
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 209 IPRNNSSRSPMESKVGITSTSSLVSNSTF 123
I +NN+ +SP++ +V ITS SS +TF
Sbjct: 41 IIQNNTRKSPLK-RVSITSESSFYKENTF 68
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 247 QRSILPIVKGRD--VIAQAQSGTGKTATFSISILQTLDTTLRE 369
Q + PI G D ++ A +G GKT + IL L LRE
Sbjct: 524 QSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLRE 566
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 282 ISAFDYRQDASLLNC*RF--FETICVYSSQ*LISKSH 178
I AF Y D LNC + ++T+C+ ++ +I SH
Sbjct: 784 IKAFTYNVDTKQLNCIKSWKYKTVCLVFAEAVIFGSH 820
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 221 PYVYIPRNNSSRSPMESKVGITSTSS 144
PY IP NN SPM VG + +++
Sbjct: 303 PYKSIPLNNRPYSPMSEIVGFSGSTT 328
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 5.7
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 277 RDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIQK 423
R + +G+GKTA F I Q LIL +ELA Q K
Sbjct: 47 RRIAVSLATGSGKTALFPHFIKYAPTLRPNSEQCLILVHRKELALQALK 95
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 112 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSA 240
+DLS E D++ +PT D + + L + KP A
Sbjct: 94 QDLSTAETAPKVDIDAVPTIDGKNIFEIDLESFDDKPWRKPGA 136
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 7.5
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 206 PRNNSSRSPMESKVGITSTSSLVSNSTFDKSSDNIFLL 93
PRN + S + + TSSL SNST K+S LL
Sbjct: 264 PRNTPTPSNNGTSINANVTSSLTSNST-GKTSKTTDLL 300
>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 539 VPDTTCCP*SNFLISSPRLVP 477
+PDTT +FL+S P+ +P
Sbjct: 33 IPDTTRTCRGHFLVSEPKTIP 53
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 73 TSSEVSSNRKILSEDLSNVEFDTSEDVEVIPT 168
+ SEV S + SE++ N+E ED E P+
Sbjct: 1337 SESEVGSKDDVQSEEVENLESAGDEDEEEEPS 1368
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 9.9
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = +1
Query: 226 EKPSAIQQRSILPIVKGRDVIA-QAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRE 402
E P Q+ L I +I ++G+GKT +L L TQ+ P R
Sbjct: 74 ELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDELPHLTNTQIACTQPRRV 133
Query: 403 LATQIQK 423
A + K
Sbjct: 134 AAMSVAK 140
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -2
Query: 241 LLKVFRNHMCIFL---AITHLEVPWSQKWV*LRHLHS 140
++ + RN+ +FL AI L++PW+ + LR+L S
Sbjct: 986 IIDIIRNNWWLFLQGLAIDLLKLPWAVFHIFLRYLFS 1022
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,643
Number of Sequences: 5004
Number of extensions: 46105
Number of successful extensions: 225
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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