Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_G06
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            33   0.13 
SB_26634| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_32536| Best HMM Match : TAFII55_N (HMM E-Value=7.2)                 28   6.4  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                27   8.5  

>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1301

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +2

Query: 266 EEFRKNKNVQNENSIKAMIAFGEDIERELRTQVIQAREIKPGVYEARITDDTVKLDNI-P 442
           E+F K+ N + ENS+KA   FG   + +   +  Q+ E++P ++  + ++ +V   N+ P
Sbjct: 207 EKFPKDSNRKTENSLKASDNFGCFSDSDEEFESFQSSEVQPDMHAVKSSNGSVLPVNLSP 266

Query: 443 FNDHAILEDGTE 478
            N H    DG +
Sbjct: 267 NNFHVSNVDGDD 278


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 27/108 (25%), Positives = 51/108 (47%)
 Frame = +2

Query: 188  KKLHRTRMKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDIERELRTQVI 367
            KK +R      E +E    A+ +K   +  K +  ++E+ + A  ++ ED+E+E++   +
Sbjct: 1205 KKDNRLEQLTMESEEMHRSASSLKAIVDKIKERLAESEDRVDACSSYIEDLEKEIKR--L 1262

Query: 368  QAREIKPGVYEARITDDTVKLDNIPFNDHAILEDGTEAPRPCCQDKTK 511
            Q ++IK G    +    T +LD +  +    L DG +    C  D  K
Sbjct: 1263 Q-KQIKKGKMRHQ---QTKELDPLSLDKVKNLRDGLDEKITCLSDVLK 1306


>SB_26634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = -1

Query: 529 SLIYLLFGFILTARSWCFCPIF*YSMIIERYVV*FHSVISNSCFINTWFYFSGLNHLSP* 350
           ++I+L   ++ T     F  +    M++ RY+   H  +      N +       HLSP 
Sbjct: 51  NVIFLFDAYVATFTLGLFRYVVITHMLLCRYIASVHQALERQIHFNAYHP----RHLSPT 106

Query: 349 FPFYIL 332
           FPF I+
Sbjct: 107 FPFLIM 112


>SB_32536| Best HMM Match : TAFII55_N (HMM E-Value=7.2)
          Length = 211

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 24/79 (30%), Positives = 32/79 (40%)
 Frame = +2

Query: 140 KTKLKMMTRRLVLQSFKKLHRTRMKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAM 319
           K  +K+    LV    K LH    +VF GDE  L      I  E  K +N  N     A 
Sbjct: 79  KEFVKLSADILVAWKVKDLHDLFQRVFPGDEWKL--GETPIRTESEKRENCDNRRQEMAC 136

Query: 320 IAFGEDIERELRTQVIQAR 376
            +  ED+ + +  QV   R
Sbjct: 137 QS-NEDLSKFVLLQVNDLR 154


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 261 IFIRAANKARSSPSKTFILVLCN 193
           +F+R +++   S SK+F+L LCN
Sbjct: 1   MFLRVSDRGWQSSSKSFLLTLCN 23


>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 755

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 288 FLFLRNS-SFIFIRAANKARSSPSKTFILVLCN 193
           F +  N+  FIF + +++   S S++F+  LCN
Sbjct: 343 FYYKNNAFCFIFFKVSDRGYQSSSRSFLFTLCN 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,794,752
Number of Sequences: 59808
Number of extensions: 252153
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)