Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_G06
(586 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83233-8|CAB05759.2| 378|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF016684-5|AAB66207.2| 297|Caenorhabditis elegans Hypothetical ... 28 5.6
U58764-4|AAB00726.2| 216|Caenorhabditis elegans Hypothetical pr... 27 7.4
U58753-3|AAC24436.1| 118|Caenorhabditis elegans Hypothetical pr... 27 7.4
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 27 7.4
AF016667-1|AAB66088.2| 162|Caenorhabditis elegans Hypothetical ... 27 7.4
Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical pr... 27 9.8
U23516-3|AAG38881.1| 218|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF016420-2|AAB65306.1| 291|Caenorhabditis elegans Serpentine re... 27 9.8
>Z83233-8|CAB05759.2| 378|Caenorhabditis elegans Hypothetical
protein K06B4.8 protein.
Length = 378
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 261 IFIRAANKARSSPSKTFILVLCNFLKLCKTKRLVIIFSLVFTKNPGI 121
IF R K + +T +VL F++L T I+ +L+F NP I
Sbjct: 225 IFRRIFEKTPALLDQTSCMVLYKFIELNITNEECILLALIFFCNPAI 271
>AF016684-5|AAB66207.2| 297|Caenorhabditis elegans Hypothetical
protein F45C12.8 protein.
Length = 297
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 257 KINEEFRKNKNVQNENSIKAMIAFGEDIERELRTQVIQAREIKPGVYEAR-ITDDTVKLD 433
+ NE+F+ Q+ + F ++ E+ R + I +K + +R +T +V+ D
Sbjct: 157 RCNEDFKLMMENQSVQLDSFQLDFDDNCEQGFRDKCIDG--VKKALKSSRRVTSKSVETD 214
Query: 434 NIPFNDHAIL 463
++PF D A L
Sbjct: 215 SVPFPDIARL 224
>U58764-4|AAB00726.2| 216|Caenorhabditis elegans Hypothetical
protein M03E7.5 protein.
Length = 216
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 134 LVKTKLKMMTRRLVLQSFKKLHRTRMKVFEGDERALLAARIKINEEFRKNKNVQNENSIK 313
L+K L+ MT R H R K E +++ALL R N+E R N E ++
Sbjct: 80 LIKNSLRTMTNR---------HTNRKKQAE-EKKALLKQRFTTNQETRVNLEFDEELNLN 129
Query: 314 AMIAFGEDIERELRTQ 361
+ + +++ ++ Q
Sbjct: 130 DKLKYSDNMIDQMLAQ 145
>U58753-3|AAC24436.1| 118|Caenorhabditis elegans Hypothetical
protein W03B1.1 protein.
Length = 118
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 239 LLAARIKINEEFRKNKNVQNENSIKAMIAFGEDIERELRTQV 364
L A I N+E K K E +IKA+ + E+++RTQ+
Sbjct: 31 LKAYEIVANQERDKTKYESLEPAIKALFTLDSEHEKKVRTQL 72
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 228 SPSKTFILVLCNFLKLCKTKRLVIIFS 148
+PS +L+L FLK KTK++++ FS
Sbjct: 296 APSDKRLLLLFTFLKKNKTKKVMVFFS 322
>AF016667-1|AAB66088.2| 162|Caenorhabditis elegans Hypothetical
protein T20H12.1 protein.
Length = 162
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 325 CNHRFNRVFILNIFVFAKFF 266
C + FNRVF L I F KFF
Sbjct: 57 CCYLFNRVFFLEISPFFKFF 76
>Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical
protein W08D2.3b protein.
Length = 559
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -1
Query: 523 IYLLFGFILTARSWCFCPIF*YSMIIERYVV*FHSVISNSCFINTWFYFSGLNHLS 356
IY L GF +T S + YSMI ++ H + S F+ F+ + LS
Sbjct: 39 IYSLIGFTVTFISLSYSHSACYSMISSAHLFNLHFAFNGSIFLGAVFHSNLSRRLS 94
>Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical
protein W08D2.3a protein.
Length = 562
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -1
Query: 523 IYLLFGFILTARSWCFCPIF*YSMIIERYVV*FHSVISNSCFINTWFYFSGLNHLS 356
IY L GF +T S + YSMI ++ H + S F+ F+ + LS
Sbjct: 42 IYSLIGFTVTFISLSYSHSACYSMISSAHLFNLHFAFNGSIFLGAVFHSNLSRRLS 97
>U23516-3|AAG38881.1| 218|Caenorhabditis elegans Hypothetical
protein B0416.4 protein.
Length = 218
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 179 QSFKKLHRTRMKVFEGDERALLAARIKINEEF 274
++FK++ R RMKV + DE+ L K N EF
Sbjct: 118 ETFKQMVRDRMKVKDVDEKLLQQYMKKENVEF 149
>AF016420-2|AAB65306.1| 291|Caenorhabditis elegans Serpentine
receptor, class sx protein12 protein.
Length = 291
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 327 NAIIALIEFSF*TFLFLRNSSFIFIRAANKARSSPSKTFILVLCNFLKLCKTKRLVI 157
N I+ + +FSF + NS FI + + S S V C F LC +++
Sbjct: 8 NIIVTVYKFSFFVIGIVGNSLFIHLIFKKQKLRSRSTLLQCVQCAFQNLCLVGTILV 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,381,335
Number of Sequences: 27780
Number of extensions: 205908
Number of successful extensions: 603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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