Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_G05
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   175   2e-44
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...   161   5e-40
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415...    30   1.2  
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    27   8.7  

>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score =  175 bits (427), Expect = 2e-44
 Identities = 90/141 (63%), Positives = 102/141 (72%), Gaps = 21/141 (14%)
 Frame = +1

Query: 118 LNMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA---------------------K 234
           L+M  + L++L           GLKRKPMAL+KKLR+A                     K
Sbjct: 270 LDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNFEGTVFRLGFYEAGSYFVK 329

Query: 235 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 414
           K+AP  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YK
Sbjct: 330 KDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYK 389

Query: 415 PVKHGRPGIGATHSSRFIPLK 477
           PVKHGRPGIGATHSSRFIPLK
Sbjct: 390 PVKHGRPGIGATHSSRFIPLK 410



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +3

Query: 63  KKRIFRKFTYRGVDLDQLLE 122
           KKR FRK++YRGVDLD LL+
Sbjct: 252 KKRTFRKYSYRGVDLDALLD 271


>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score =  161 bits (390), Expect = 5e-40
 Identities = 79/132 (59%), Positives = 96/132 (72%)
 Frame = +1

Query: 31  ETWLRSTKPSRKSVFSGSSLTGELISISSLNMPNEQLMELMHXXXXXXXXXGLKRKPMAL 210
           ET + +    +K  F   S  G  +  + L+M  + L++L           GLKRKPMAL
Sbjct: 114 ETEVAAGAQPKKRTFRKYSYRGVDLD-ALLDMSTDDLVQLFPARARRRFQRGLKRKPMAL 172

Query: 211 VKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYL 390
           +KKLR+AKK+AP  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL
Sbjct: 173 IKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYL 232

Query: 391 GEFSVTYKPVKH 426
            EFS++YKPVKH
Sbjct: 233 AEFSISYKPVKH 244


>06_01_0580 +
           4148969-4149101,4149394-4149546,4149682-4150095,
           4150218-4150294,4151479-4152699,4153057-4153128
          Length = 689

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 28  QETWLRSTKPSRKSVFSGSSLTGELIS----ISSLNMPNEQLME 147
           Q+ W+         VFSGSSLT  L S    + S ++P ++L+E
Sbjct: 375 QQNWIHQEGNGLSDVFSGSSLTNTLSSTLQRVPSSSLPPQELLE 418


>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 300 NDDHVSQVSLHDLWLLIRRSLFLGATQLLDQCHWFT 193
           +DD+V+ VSL+ L  L    ++L    L  +CH+FT
Sbjct: 655 DDDNVTPVSLNKLVSLTIAEIWLYGCLLRFRCHFFT 690


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,612
Number of Sequences: 37544
Number of extensions: 261211
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)