Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_G03
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    73   4e-15
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    73   4e-15
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 72.9 bits (171), Expect = 4e-15
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 2/188 (1%)
 Frame = +1

Query: 247 HLVAGISGGVTSTLILHPLDLIKIRFAVNDGRTATVPRYDGLSSAFVTIVKKEGVRGLYR 426
           +L +G + G TS   ++PLD  + R A + G+      + GL +    I K +G+ GLYR
Sbjct: 118 NLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYR 177

Query: 427 GVTPNVWGSGSAWGFYFLFYNAIKTWIQGGNARTP--LGPGLHMLAAAEAGVLSLVMTNP 600
           G   +V G       YF FY+  +  +     +TP  +  G+  +    AG++S     P
Sbjct: 178 GFGVSVQGIIIYRAAYFGFYDTARGMLPDPK-KTPFLISWGIAQVVTTVAGIVSY----P 232

Query: 601 IWVVKTRLCLQYSEEHVADNKRYKGMVDGLLKIYRTEGIRGLYRGFVPXMFGVSHGALQF 780
              V+ R+ +Q           YK  +     IY+TEG    ++G    +   + GAL  
Sbjct: 233 FDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVL 290

Query: 781 MTYEEMXN 804
           + Y+E+ N
Sbjct: 291 VLYDEIKN 298



 Score = 59.7 bits (138), Expect = 4e-11
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 5/177 (2%)
 Frame = +1

Query: 244 EHLVAGISGGVTSTLILHPLDLIKIRFAVN--DGRTATVPRYDGLSSAFVTIVKKEGVRG 417
           + L  G++  ++ T +  P++ +K+   V     + +   RY G+   FV I K++G   
Sbjct: 13  DFLAGGVAAAISKTTVA-PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLS 71

Query: 418 LYRGVTPNVWGSGSAWGFYFLFYNAIKTWIQGG---NARTPLGPGLHMLAAAEAGVLSLV 588
            +RG   NV          F F +  K    GG   N +       ++ +   AG  SL 
Sbjct: 72  YWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLC 131

Query: 589 MTNPIWVVKTRLCLQYSEEHVADNKRYKGMVDGLLKIYRTEGIRGLYRGFVPXMFGV 759
              P+   +TRL     +      + + G+ + L KI++ +GI GLYRGF   + G+
Sbjct: 132 FVYPLDFARTRLAADVGK--AGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGI 186



 Score = 42.3 bits (95), Expect = 6e-06
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = +1

Query: 529 PLGPGLHMLAAAEAGVLSLVMTNPIWVVKTRLCLQYSEEHVADNKRYKGMVDGLLKIYRT 708
           P+      LA   A  +S     PI  VK  L +Q+  + +++ +RYKGM+D  ++I + 
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 709 EGIRGLYRG 735
           +G    +RG
Sbjct: 67  QGFLSYWRG 75


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 72.9 bits (171), Expect = 4e-15
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 2/188 (1%)
 Frame = +1

Query: 247 HLVAGISGGVTSTLILHPLDLIKIRFAVNDGRTATVPRYDGLSSAFVTIVKKEGVRGLYR 426
           +L +G + G TS   ++PLD  + R A + G+      + GL +    I K +G+ GLYR
Sbjct: 118 NLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYR 177

Query: 427 GVTPNVWGSGSAWGFYFLFYNAIKTWIQGGNARTP--LGPGLHMLAAAEAGVLSLVMTNP 600
           G   +V G       YF FY+  +  +     +TP  +  G+  +    AG++S     P
Sbjct: 178 GFGVSVQGIIIYRAAYFGFYDTARGMLPDPK-KTPFLISWGIAQVVTTVAGIVSY----P 232

Query: 601 IWVVKTRLCLQYSEEHVADNKRYKGMVDGLLKIYRTEGIRGLYRGFVPXMFGVSHGALQF 780
              V+ R+ +Q           YK  +     IY+TEG    ++G    +   + GAL  
Sbjct: 233 FDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVL 290

Query: 781 MTYEEMXN 804
           + Y+E+ N
Sbjct: 291 VLYDEIKN 298



 Score = 59.7 bits (138), Expect = 4e-11
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 5/177 (2%)
 Frame = +1

Query: 244 EHLVAGISGGVTSTLILHPLDLIKIRFAVN--DGRTATVPRYDGLSSAFVTIVKKEGVRG 417
           + L  G++  ++ T +  P++ +K+   V     + +   RY G+   FV I K++G   
Sbjct: 13  DFLAGGVAAAISKTTVA-PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLS 71

Query: 418 LYRGVTPNVWGSGSAWGFYFLFYNAIKTWIQGG---NARTPLGPGLHMLAAAEAGVLSLV 588
            +RG   NV          F F +  K    GG   N +       ++ +   AG  SL 
Sbjct: 72  YWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLC 131

Query: 589 MTNPIWVVKTRLCLQYSEEHVADNKRYKGMVDGLLKIYRTEGIRGLYRGFVPXMFGV 759
              P+   +TRL     +      + + G+ + L KI++ +GI GLYRGF   + G+
Sbjct: 132 FVYPLDFARTRLAADVGK--AGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGI 186



 Score = 42.3 bits (95), Expect = 6e-06
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = +1

Query: 529 PLGPGLHMLAAAEAGVLSLVMTNPIWVVKTRLCLQYSEEHVADNKRYKGMVDGLLKIYRT 708
           P+      LA   A  +S     PI  VK  L +Q+  + +++ +RYKGM+D  ++I + 
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 709 EGIRGLYRG 735
           +G    +RG
Sbjct: 67  QGFLSYWRG 75


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 515 PPCIHVLMAL*NRK*NPQAEPEPQTFGVTPL 423
           P C+ V+M+  +    P+A P   T GVT L
Sbjct: 254 PTCLIVIMSWVSFWIKPEAAPARVTLGVTSL 284


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 284 VDVTPPDIPATRCSYLMWLRSA 219
           V V PPDI     ++L W+ SA
Sbjct: 332 VPVEPPDILMPALTWLGWINSA 353


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 239 LMWLRSASLEDDG-FGF 192
           L W  SASLE+D  FGF
Sbjct: 13  LFWQNSASLENDNEFGF 29


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 349 TVPRYDGLSSAFVTIVKKEGVRG 417
           TVPRY G+ S+   I +K G  G
Sbjct: 83  TVPRYKGVPSSLNVISEKIGNGG 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,274
Number of Sequences: 438
Number of extensions: 6587
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)