Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_G02
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731...    30   1.1  
03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    28   4.5  
08_02_0311 - 15635165-15635590,15635777-15638698                       27   6.0  
06_01_0203 + 1555471-1555523,1555743-1555863,1556340-1556651,155...    27   7.9  
06_01_0083 - 659510-661267,661577-662384,662700-663646                 27   7.9  

>02_05_1303 +
           35572403-35572624,35572744-35572860,35572987-35573112,
           35573217-35573279,35573837-35573944,35574587-35574664,
           35574772-35574864,35575206-35575292,35575429-35575530,
           35575617-35575736,35575839-35575901,35575974-35576119,
           35576203-35576296,35576399-35576457,35576568-35576607,
           35576694-35576785,35576877-35576946,35578172-35578333,
           35578477-35578703,35578863-35579070,35579173-35579258,
           35579450-35579541,35579674-35579870
          Length = 883

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 2   GRPMIS-SCFEVTQRTTSGQXCTNSRFYSLFWLAS*WPKPNSLSHP 136
           GR ++  S F +      G+  T+SR   LFW AS W K     HP
Sbjct: 824 GRSVVGVSPFGLATYRAEGKLWTSSRSSDLFWAASSWLKQLRAYHP 869


>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 185 TMNPWRLFINLFRMKLKNSCYARSLKPTPPKQKHRQN 295
           TM  W++FI  F +   + C+ + +K +   + H +N
Sbjct: 250 TMKHWQVFILFFELFTASVCFGKRIKHSSISEGHDEN 286


>08_02_0311 - 15635165-15635590,15635777-15638698
          Length = 1115

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 43  NYLRPXMYKFTILFLVLACFIMA 111
           +YL   +Y FT +FL++ CFI A
Sbjct: 917 SYLNVGIYPFTSIFLLVYCFIPA 939


>06_01_0203 +
           1555471-1555523,1555743-1555863,1556340-1556651,
           1556806-1556910,1557009-1557466,1557886-1558187,
           1558300-1558481,1558893-1559083,1559248-1559381,
           1559487-1559725
          Length = 698

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 37  SKNYLRPXMYKFTILFLVLACFIMA 111
           +K+Y RP ++   +LFL   C+ MA
Sbjct: 309 NKSYFRPLIFSSIVLFLGNVCYAMA 333


>06_01_0083 - 659510-661267,661577-662384,662700-663646
          Length = 1170

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 46   YLRPXMYKFTILFLVLACFIMA 111
            YL   +Y FT +FL++ CF+ A
Sbjct: 944  YLNVGIYPFTSIFLIVYCFLPA 965


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,729,552
Number of Sequences: 37544
Number of extensions: 222323
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)