Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_G01
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    27   4.7  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    27   4.7  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   8.2  

>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 366 WLKNGEPIEEYEEATNEVVLTDPESFAKIVSKLVVVAPTDG 488
           W    EP+     +  EVVLT  +  AK ++K + V   DG
Sbjct: 125 WESEAEPVFSSAHSICEVVLTRRKDHAKSIAKNLDVGSYDG 165


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 315 QLELECLIIGKPAPIVEWLKNGEPIEEYEEATNEVVLTDPESFAKIVSKLVVVA 476
           +L+L  +++ + A IVE  +  EP+E   E   E    +P    K V KLV VA
Sbjct: 488 RLDLHGILVVEQAYIVEEQEVEEPVETSPEEEAEKKTDEPVKMRK-VKKLVKVA 540


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 490 SPSVGATTTSLLTILAKLSGSVRTTSLVA 404
           SPS  ++TTS+ +I + +S SV T+S  +
Sbjct: 140 SPSAVSSTTSIPSISSTISSSVSTSSFTS 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,341,635
Number of Sequences: 5004
Number of extensions: 64439
Number of successful extensions: 178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)