Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_G01
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 32 0.70
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 31 0.93
05_05_0017 + 21546434-21546841 31 1.6
03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240 30 2.1
05_07_0286 - 28988294-28988383,28988486-28989007,28989117-289897... 30 2.8
07_03_0015 - 12447947-12448393 29 6.6
03_05_0981 - 29391027-29391099,29391227-29391350,29391443-293915... 29 6.6
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 29 6.6
12_01_0044 + 349798-350173,350745-350905,351527-351662,352110-35... 28 8.7
10_08_0006 - 14035990-14036135,14036246-14036339,14036845-140371... 28 8.7
02_05_0414 + 28778438-28778750,28779240-28779298,28779391-287795... 28 8.7
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 31.9 bits (69), Expect = 0.70
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 338 HRETSADRRMAEERGTDRGIRRGN*RSRP-DRPGELRQDRQQAGRGRS 478
H++ DR E+R DR RR + SR DR G R+DR GRS
Sbjct: 305 HKDREHDRHAREDR--DRDYRRSSYSSRNVDRQGRERRDRDSDRHGRS 350
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 31.5 bits (68), Expect = 0.93
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = -3
Query: 500 GIPVAISGSDHDQLADDLGEALRVG 426
G+P+++SG DH ++ D+L +++G
Sbjct: 686 GLPLSVSGPDHTEMEDELARCVQIG 710
>05_05_0017 + 21546434-21546841
Length = 135
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +1
Query: 736 STXPLAG*ECCRPGTCTSXASSGPTWATTRAWLKTFTARIPAP 864
S PL+ E CRPG SS P ATT A PAP
Sbjct: 57 SPAPLSTPELCRPGEPVPAPSSSPAGATTTPAPAAPAATAPAP 99
>03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240
Length = 336
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = +1
Query: 661 TCCFPAGCSATPRPRCTGNMATTTWSTXPLAG*ECCRPGTCTSXASSGPTWATTRAWLKT 840
T C AGC+A RC + + A +P C S A + P A+ +
Sbjct: 152 TTCAAAGCAADLNARCPAELRAVGGAACRSACDAFGKPEFCCSGAYANPNTCRPTAYSQV 211
Query: 841 FTARIPAPPSF 873
F + P S+
Sbjct: 212 FKSACPRSYSY 222
>05_07_0286 -
28988294-28988383,28988486-28989007,28989117-28989758,
28990554-28990597,28990836-28991016
Length = 492
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/87 (24%), Positives = 39/87 (44%)
Frame = +3
Query: 231 SVPKRRTLKNFAHISQAPPDTVHHTTGSQLELECLIIGKPAPIVEWLKNGEPIEEYEEAT 410
+V +R L+ FA + +APP T + E+ ++G+P P P + + +
Sbjct: 75 AVQQRSHLERFAALDEAPPPAPEETVVTGGEMVDYMLGQPPPTT-------PGPQSQVSF 127
Query: 411 NEVVLTDPESFAKIVSKLVVVAPTDGD 491
+++ +D FA KL + P D
Sbjct: 128 DKLTFSDVLQFADFGPKLALNQPAASD 154
>07_03_0015 - 12447947-12448393
Length = 148
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 594 EASPSLISPPRHRQCTQWWWR 532
EA P PPR C +WWWR
Sbjct: 32 EARPRATLPPR---CRRWWWR 49
>03_05_0981 -
29391027-29391099,29391227-29391350,29391443-29391576,
29391814-29391895,29391955-29392012,29392344-29392418,
29392518-29392596,29393034-29393110,29393210-29393329
Length = 273
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1
Query: 259 FFRVLRLGTEGALDRLLSNF 200
F RV LGT+G LDRL++N+
Sbjct: 138 FLRVRFLGTDGKLDRLITNW 157
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 660 DLLLPCRVFSYAKTQVYWQYGDNNLV 737
D +L CRVF+YA TQ Y + G N L+
Sbjct: 350 DKMLQCRVFAYADTQRY-RLGPNYLM 374
>12_01_0044 +
349798-350173,350745-350905,351527-351662,352110-352206,
352344-352444,352658-352821,353461-353582,353667-353718
Length = 402
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 327 PALIASQWYDARCREAPAIY-ARSSSESYAWERKAH 223
P+ A +W ARCR PA+ E W R+A+
Sbjct: 37 PSTAAPRWRPARCRGKPAVEDVVHDDEEETWRREAN 72
>10_08_0006 -
14035990-14036135,14036246-14036339,14036845-14037176,
14038040-14038094,14038682-14038750,14038940-14039039,
14039212-14039255,14039705-14039873,14040262-14040333,
14040439-14040519,14040586-14040650,14040796-14041260
Length = 563
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 192 DSTKLDNSLSSAPSVPKRRTLKNFAHISQAPPDTVHHTTGSQLE 323
D T +S S++PS P R + + +H D++H T ++L+
Sbjct: 41 DDTTAPSSPSTSPSSPSRPSSPSSSHSDDDDDDSLHTFTAARLD 84
>02_05_0414 +
28778438-28778750,28779240-28779298,28779391-28779522,
28779612-28779752,28780213-28780269,28780841-28780981,
28782037-28782230,28782347-28782413,28782593-28782726,
28783023-28783089,28783381-28783443,28783848-28784086,
28784176-28784305,28784384-28784476,28784726-28784929,
28785116-28785400
Length = 772
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 548 HSGGGAVSLEPRTGRAGIPVAISGSDHDQLADDLGEALRVGQDDF 414
H+G +L P TG I ++G HD + DD E L+ ++ F
Sbjct: 153 HTGKILAALVPSTGERAINTVVAGILHD-VIDDTAENLKSIEEQF 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,019,046
Number of Sequences: 37544
Number of extensions: 546150
Number of successful extensions: 1772
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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