Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_F22
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 374 e-104
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 373 e-104
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 373 e-104
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 183 3e-47
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 175 7e-45
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 99 7e-22
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 50 6e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 3e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 1e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.013
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.022
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 30 0.37
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 30 0.37
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.37
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.48
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.64
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.64
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.6
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 3.4
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 4.5
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 7.9
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 374 bits (919), Expect = e-104
Identities = 172/218 (78%), Positives = 193/218 (88%)
Frame = +1
Query: 145 IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYV 324
IYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY V
Sbjct: 28 IYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNV 87
Query: 325 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 504
T+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQ
Sbjct: 88 TVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQ 147
Query: 505 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 684
LIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T
Sbjct: 148 LIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTN 205
Query: 685 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKP 798
MPW++GWQ E K G GK L+EA+D+I PPARPTDKP
Sbjct: 206 MPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKP 243
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +3
Query: 63 MGKEKTHINIVVIGHVDSGKSTTTGHL 143
MGKEK HIN+VVIGHVDSGKSTTTGHL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHL 27
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 798 PWRLPLQDVYXIGGIGTVP 854
P RLPLQDVY IGGIGTVP
Sbjct: 243 PLRLPLQDVYKIGGIGTVP 261
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 373 bits (918), Expect = e-104
Identities = 171/218 (78%), Positives = 193/218 (88%)
Frame = +1
Query: 145 IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYV 324
IYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY V
Sbjct: 28 IYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNV 87
Query: 325 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 504
T+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQ
Sbjct: 88 TVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQ 147
Query: 505 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 684
LIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T
Sbjct: 148 LIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTN 205
Query: 685 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKP 798
MPW++GWQ E K G GK L+EA+D+I PPARPTDKP
Sbjct: 206 MPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKP 243
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +3
Query: 63 MGKEKTHINIVVIGHVDSGKSTTTGHL 143
MGKEK HIN+VVIGHVDSGKSTTTGHL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHL 27
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 798 PWRLPLQDVYXIGGIGTVP 854
P RLPLQDVY IGGIGTVP
Sbjct: 243 PLRLPLQDVYKIGGIGTVP 261
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 373 bits (918), Expect = e-104
Identities = 171/218 (78%), Positives = 193/218 (88%)
Frame = +1
Query: 145 IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYV 324
IYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY V
Sbjct: 28 IYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNV 87
Query: 325 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 504
T+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQ
Sbjct: 88 TVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQ 147
Query: 505 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 684
LIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T
Sbjct: 148 LIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTN 205
Query: 685 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKP 798
MPW++GWQ E K G GK L+EA+D+I PPARPTDKP
Sbjct: 206 MPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKP 243
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +3
Query: 63 MGKEKTHINIVVIGHVDSGKSTTTGHL 143
MGKEK HIN+VVIGHVDSGKSTTTGHL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHL 27
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 798 PWRLPLQDVYXIGGIGTVP 854
P RLPLQDVY IGGIGTVP
Sbjct: 243 PLRLPLQDVYKIGGIGTVP 261
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 183 bits (445), Expect = 3e-47
Identities = 98/221 (44%), Positives = 133/221 (60%), Gaps = 3/221 (1%)
Frame = +1
Query: 145 IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYV 324
+++ G I+ R+++K EA GKGSF YAW+LD + ER RG+T+D+A FE+ K
Sbjct: 198 MFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIY 257
Query: 325 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 504
I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L LG+ +
Sbjct: 258 EIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISE 317
Query: 505 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EP 675
++V VNK+D +SE RF+EIK VS + IK +G+ + V FVPIS G N++ +
Sbjct: 318 IVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDS 375
Query: 676 STKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKP 798
S W+K G L+ ALD ++PP +P KP
Sbjct: 376 SDLYKWYK------------GPTLLSALDQLVPPEKPYRKP 404
Score = 32.7 bits (71), Expect = 0.069
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 75 KTHINIVVIGHVDSGKSTTTGHLYLQM 155
K +++VV GHVDSGKST G + ++
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFEL 201
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 175 bits (426), Expect = 7e-45
Identities = 81/190 (42%), Positives = 126/190 (66%), Gaps = 4/190 (2%)
Frame = +1
Query: 145 IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYV 324
++ G +DKRT+EK E+EA+E GK S+ +W LD ERE+G T+++ FET
Sbjct: 259 LFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 318
Query: 325 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 504
+++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G+
Sbjct: 319 SLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINH 378
Query: 505 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWHGDNMLE-- 672
L+V +NKMD +SE R++E ++S +++++ GYN V ++P+S + G N+ +
Sbjct: 379 LVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 438
Query: 673 PSTKMPWFKG 702
S+ PW++G
Sbjct: 439 DSSVCPWYQG 448
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 75 KTHINIVVIGHVDSGKSTTTGHL 143
K H+NIV IGHVD+GKST G++
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNI 258
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 99.1 bits (236), Expect = 7e-22
Identities = 53/130 (40%), Positives = 79/130 (60%)
Frame = +1
Query: 205 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 384
++G+ SF +DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
Query: 385 QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRF 564
D A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP E
Sbjct: 139 TMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVE 191
Query: 565 EEIKKEVSSY 594
E+++ +S Y
Sbjct: 192 MEMRELLSEY 201
Score = 33.5 bits (73), Expect = 0.039
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 69 KEKTHINIVVIGHVDSGKSTTT 134
++K H+NI IGHVD GK+T T
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLT 70
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 49.6 bits (113), Expect = 6e-07
Identities = 36/98 (36%), Positives = 50/98 (51%)
Frame = +1
Query: 238 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 417
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-- 124
Query: 418 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 531
+ AG+ QT+ A G+ ++I VNKMD
Sbjct: 125 ---DGSAGV--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 241 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 408
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 409 VAAGTG 426
V A G
Sbjct: 155 VDASQG 160
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +1
Query: 319 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 498
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 499 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 597
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect = 0.013
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 211 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 384
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 385 QADCAVLIVAAGTG 426
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.022
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Frame = +1
Query: 241 LDKLKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIK 363
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 364 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 471
+ D AVL++ A +G I+ + Q R +
Sbjct: 161 EVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.37
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 63 MGKEKTHINIVVIGHVDSGKSTTTGHL 143
MGK N+ VI HVD GKST T L
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSL 39
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 316 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 411
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.37
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 63 MGKEKTHINIVVIGHVDSGKSTTTGHL 143
MGK N+ VI HVD GKST T L
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSL 39
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 316 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 411
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.37
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 316 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 426
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.48
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 244 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 366
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.64
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 281 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 153
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.64
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 328 IIDAPGHRDFIKNMITGTSQADCAVLIV 411
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -2
Query: 785 GRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 648
G GG S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +1
Query: 259 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 411
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 548 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 718
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 719 RKA 727
++
Sbjct: 205 SQS 207
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 305 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 174
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 271 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 173
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,661,647
Number of Sequences: 5004
Number of extensions: 77985
Number of successful extensions: 277
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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