Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_F22
(858 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 172 4e-43
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 4e-30
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 113 2e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 55 6e-08
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 44 2e-04
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 42 6e-04
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 35 0.074
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_46033| Best HMM Match : Phage_integrase (HMM E-Value=0.022) 31 0.91
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 31 1.2
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 30 2.1
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 6.4
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 29 6.4
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 28 8.5
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 172 bits (418), Expect = 4e-43
Identities = 73/157 (46%), Positives = 113/157 (71%)
Frame = +1
Query: 148 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 327
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 328 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 507
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 508 IVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 618
++ VNKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (310), Expect = 4e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +1
Query: 208 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 387
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Frame = +1
Query: 661 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKP 798
NM+ +++MPWFK W +ER KE A G L E LD+ILPP+RP+ P
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLP 104
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 798 PWRLPLQDVYXIGGIGTVP 854
P RLPLQDVY IGGIGTVP
Sbjct: 104 PLRLPLQDVYKIGGIGTVP 122
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 113 bits (271), Expect = 2e-25
Identities = 50/84 (59%), Positives = 65/84 (77%)
Frame = +1
Query: 280 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 459
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 460 TREHALLAFTLGVKQLIVGVNKMD 531
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 55.2 bits (127), Expect = 6e-08
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = +3
Query: 63 MGKEKTHINIVVIGHVDSGKSTTTGHL 143
M KEK HINIVVIGHVDSGKSTTTGHL
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHL 27
Score = 46.0 bits (104), Expect = 4e-05
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +1
Query: 145 IYKCGGIDKRTIEKFEKEAQEM 210
IYKCGGIDKRTIEKFEKE+ E+
Sbjct: 28 IYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/78 (24%), Positives = 38/78 (48%)
Frame = +1
Query: 193 KEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 372
+EA + K D ++ ER+RGI++ ++ F + I+D PGH+DF ++
Sbjct: 38 QEAGAVKSNKIKKGATSDFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTF 97
Query: 373 TGTSQADCAVLIVAAGTG 426
+ D ++++ G
Sbjct: 98 RTLTAVDSVIVVIDVAKG 115
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 41.9 bits (94), Expect = 6e-04
Identities = 30/117 (25%), Positives = 52/117 (44%)
Frame = +1
Query: 247 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 426
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 427 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 597
QT EH + +K +++ NK+D + ++ ++++I K V I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 35.1 bits (77), Expect = 0.074
Identities = 29/107 (27%), Positives = 45/107 (42%)
Frame = +1
Query: 271 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 450
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 451 NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 591
QT+E A GV +I +NK+D P + P + IK ++S+
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKIDK---PNANP--DNIKTQLST 216
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.13
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +1
Query: 322 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 501
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 502 QLIVGVNKMD 531
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_46033| Best HMM Match : Phage_integrase (HMM E-Value=0.022)
Length = 645
Score = 31.5 bits (68), Expect = 0.91
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 848 GTNTTDXVYVLQGKTPGGLSVGRAGGRMASRA 753
GT + Y +QG GG R G RMASR+
Sbjct: 246 GTESDSAFYCIQGAVHGGRGRARVGSRMASRS 277
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Frame = +1
Query: 244 DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 384
DK +ERGIT+D+ F+ + +T++D PGH IK +I G
Sbjct: 65 DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122
Query: 385 QADCAVLIVAAGTGEFEAGISKNGQTR 465
A +I GT E G ++G+ +
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGKVK 143
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Frame = -2
Query: 596 MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 444
+Y+D S L+S N L ++E IL TPT + + K C + P
Sbjct: 796 LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855
Query: 443 IPASNSPVPAAT 408
+ NSP+P+ T
Sbjct: 856 VTNGNSPIPSGT 867
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 328 IIDAPGHRDFIKNMITGTSQADCAVLIV 411
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 238 VLDKLKAERERGITI 282
VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 282 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFV 148
D TT+T S YPS+ + +F D T N TT V
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLV 388
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDT 142
TT+T S YPS+ + +F D T N TT V +
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQS 591
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = -1
Query: 366 VLDEISVSRSINDGNIVLASFELPESNIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXX 187
V I ++ + N V + +++ TT+T S YPS+ + + +F
Sbjct: 4 VASSIQLNITSNTTMAVNDTLRTTSTSVVFPTTITPSPNITSYPSLMKSAVGNFTSATSV 63
Query: 186 XLDGTFVNTTTFVDTS 139
+D T N T V +S
Sbjct: 64 VVDSTTPNATRLVPSS 79
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/78 (24%), Positives = 32/78 (41%)
Frame = -1
Query: 372 DHVLDEISVSRSINDGNIVLASFELPESNIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXX 193
+ V I +S + N V + + ++ TT+T S YPS+ + +F
Sbjct: 605 ESVASSIQLSITSNTTMAVNDTLKTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSAT 664
Query: 192 XXXLDGTFVNTTTFVDTS 139
+D T N T V +S
Sbjct: 665 SVVVDSTTPNATRLVPSS 682
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 733 DGKCLIEALDAILPPARPTDKPPGVFPCKTYTKS 834
D + +E L +++PP T K F C YT S
Sbjct: 1182 DSQAHLETLGSVIPPHEDTIKSAECFVCSLYTTS 1215
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 8.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 649 WHGDNMLEPSTKMPWFKGWQVERKE 723
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 316 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 426
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 532 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 672
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,305,536
Number of Sequences: 59808
Number of extensions: 627221
Number of successful extensions: 1915
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1908
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -