Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_F21
(594 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 33 0.031
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 31 0.17
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 29 0.39
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 28 1.2
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 27 1.6
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 27 2.7
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 4.8
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 26 4.8
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 26 4.8
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 26 4.8
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 6.3
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 33.1 bits (72), Expect = 0.031
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 215 GRGRKANKEQQIYGVWAKDSDDDENEDNVR-QRIRKPKDFSAPIGFVAGGVQQAGKKKDK 391
GRGRK NK +++ D +DD +++ I K + G A V++ + D
Sbjct: 1348 GRGRKTNKPVAT-TIFSSDDEDDLLPSSLKPSTITSTKASAKNKGKKASSVKKQSPEDDD 1406
Query: 392 TKEIKPAEASTSAPKYSDSSDEEPE 466
I P +ST PK S ++ E PE
Sbjct: 1407 DDFIIPGSSST--PKASSTNAEPPE 1429
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 30.7 bits (66), Expect = 0.17
Identities = 24/93 (25%), Positives = 39/93 (41%)
Frame = +2
Query: 251 YGVWAKDSDDDENEDNVRQRIRKPKDFSAPIGFVAGGVQQAGKKKDKTKEIKPAEASTSA 430
YG DSDDDE N Q K + + +A GKK +KE +E+ S
Sbjct: 190 YGAVISDSDDDE--SNTEQDHSKESNLNTADNDLALSSTIEGKKTSTSKEALESESLLSD 247
Query: 431 PKYSDSSDEEPEVPXASDTAGIRRQGQGMRPPS 529
S ++ + ++++ +G+ PPS
Sbjct: 248 SDQSMTNISSNSTVSDLNLKTLKKRLRGVLPPS 280
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 29.5 bits (63), Expect = 0.39
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Frame = +2
Query: 149 MSDDEVIKFEITDYDXDNEFNP---GRGRKA---NKEQQIYGVWAKDSDDDENEDNVRQR 310
MS++EV+ T+ D + + P G G N E++ G+ D+D+DEN+ +
Sbjct: 1 MSENEVVGSPTTNGDKNEDGYPAENGEGTNVDDNNNEEEKDGI-PLDNDNDENDSSEESA 59
Query: 311 IRKPKDFSAPIGFVAGGVQQAGKKKDKTKEIKPAEASTSAPKYSDSSDEE 460
+ + GF+ + ++ + K+ + A ++A + D DEE
Sbjct: 60 TDEEAERQVREGFIVEDEEDEVPQEIRRKKKRKKHAESTADQ--DMLDEE 107
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 389 KTKEIKPAEASTS-APKYSDSSDEEPEVPXASDTAGIRRQGQGMRPPS 529
+ + + P+ +T+ +PK + EP A+ IRR + RPP+
Sbjct: 225 RKRSVSPSSQNTARSPKRMATEPIEPASSPAASNQAIRRSSRSRRPPT 272
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 27.5 bits (58), Expect = 1.6
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Frame = +2
Query: 233 NKEQQIYGVWAKDSDDDENE----DNVRQRIRKPKDFSAPIGFVAGGVQQAGK----KKD 388
N+ QI +SDDD N +N +R K SA G G ++ + +K
Sbjct: 433 NQNDQILPNETSESDDDANSISSMENEEERTSDSKS-SAKQGKGNGRAKETPEEKRARKK 491
Query: 389 KTKEIKPAEASTSAPKY 439
KTKE K + + PKY
Sbjct: 492 KTKEDKAEKRKSKIPKY 508
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 234 TRNNKYTVYGPKTVMMMKMKIMLDREYVNLKIFLHQLVLWRVE 362
TR+ +Y PKT+ + L++ +NL L +W E
Sbjct: 190 TRSIACLLYSPKTIAAAAFQFALEKNEINLSTTTDGLPVWMEE 232
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.8 bits (54), Expect = 4.8
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Frame = +2
Query: 179 ITDYDXDN-EFNPGRGRKANKEQ-----------QIYGVWAKDSDDDENEDNVRQRIRKP 322
+T+ D D ++ P +G+K K Q +I V K + E E R+++RK
Sbjct: 137 VTELDDDEFDYKPKKGKKGKKAQNNNESEAAAPPEIPEVRVKTKKEKEREKKEREKLRKK 196
Query: 323 KDFSAPIGFVAGGVQQAGKKKDKTKEIKPAEASTSA 430
+ + G + + + PAE +SA
Sbjct: 197 QQQAKKKGSTGEDTLASSEVSSEVDISTPAENDSSA 232
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 212 PGRGRKANKEQQIYGVWAKDSDDDENEDNVRQRIRKPK 325
P R K +K+ + W SDDD ++D +KPK
Sbjct: 51 PPRHHKEHKKSHHH--WEYSSDDDSSDDEESCEKKKPK 86
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 431 PKYSDSSDEEPEVPXASDTAGIRRQG 508
PK+SD S E+P S+ G++R G
Sbjct: 217 PKFSDYSAEKPMYDTISEDDGLKRGG 242
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 359 GVQQAGKKKDKTKEIKPAEASTSA 430
GV+QA KKK K E + A A+ +A
Sbjct: 78 GVEQAAKKKAKAAEAEAAAAARAA 101
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 230 ANKEQQIYGVWAKDSDDDENEDNVRQRIRKPKDFSA 337
A++ QQ A D +D+E ++ + + + + +DF A
Sbjct: 448 ADETQQTLLTSALDDEDEEGDEEMEEALSEDEDFQA 483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,028
Number of Sequences: 5004
Number of extensions: 36660
Number of successful extensions: 136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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