Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_F19
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    35   0.034
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        29   3.0  
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 55  LPLXSERRKHKL-KRLVPHPNSYFMDVKCPGCYKITTVFSHAQRV 186
           +P+ S R K  + KR  P P     ++K P  Y++TT+ +H+ RV
Sbjct: 415 VPIISGRLKTSMNKRTKPKPGERATEIKSPSTYQVTTMVTHSPRV 459


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +1

Query: 202 CSTILCQPTGGRARLTEGCSFRRKQ 276
           C  ++CQ +  ++R T+GC ++R++
Sbjct: 230 CEVLVCQRSDKKSRCTKGCPYQRRR 254


>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 133 KCPGCYKITTVFSHAQRVVVCAGC 204
           +CP CY ++ V  + Q V  C+ C
Sbjct: 208 RCPRCYPMSKVLPNVQGVTQCSRC 231


>SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 88  LKRLVPHPNSYFMDVKCPGCYKI 156
           ++RLVP  NSY + +   GC  I
Sbjct: 95  VRRLVPRTNSYILSIDLEGCTSI 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,379,288
Number of Sequences: 59808
Number of extensions: 219494
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)