Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_F18
         (726 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017480-1|AAH17480.1|  542|Homo sapiens heterogeneous nuclear r...    30   9.7  
AY236963-1|AAQ20084.2|  537|Homo sapiens stromal RNA regulating ...    30   9.7  
AY236962-1|AAQ20083.1|  508|Homo sapiens stromal RNA regulating ...    30   9.7  
AF461722-1|AAN76189.1|  537|Homo sapiens BLOCK24 variant protein.      30   9.7  
AC011247-1|AAY24302.1|  542|Homo sapiens unknown protein.              30   9.7  

>BC017480-1|AAH17480.1|  542|Homo sapiens heterogeneous nuclear
           ribonucleoprotein L-like protein.
          Length = 542

 Score = 29.9 bits (64), Expect = 9.7
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = -1

Query: 333 YTNTPLIITEETYLEIKNKIKHNAPLKQFERFVYLPSKLLVNDII--GANTKAV--LTCL 166
           Y N PL +TEET+ ++ N  +    +K ++ F   PS   ++ ++     T AV  LT L
Sbjct: 458 YYNVPLCVTEETFTKLCNDHEVLTFIK-YKVFDAKPSAKTLSGLLEWECKTDAVEALTAL 516

Query: 165 RYNSKRC*NSSNP 127
            +   R  N SNP
Sbjct: 517 NHYQIRVPNGSNP 529


>AY236963-1|AAQ20084.2|  537|Homo sapiens stromal RNA regulating
           factor protein.
          Length = 537

 Score = 29.9 bits (64), Expect = 9.7
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = -1

Query: 333 YTNTPLIITEETYLEIKNKIKHNAPLKQFERFVYLPSKLLVNDII--GANTKAV--LTCL 166
           Y N PL +TEET+ ++ N  +    +K ++ F   PS   ++ ++     T AV  LT L
Sbjct: 453 YYNVPLCVTEETFTKLCNDHEVLTFIK-YKVFDAKPSAKTLSGLLEWECKTDAVEALTAL 511

Query: 165 RYNSKRC*NSSNP 127
            +   R  N SNP
Sbjct: 512 NHYQIRVPNGSNP 524


>AY236962-1|AAQ20083.1|  508|Homo sapiens stromal RNA regulating
           factor protein.
          Length = 508

 Score = 29.9 bits (64), Expect = 9.7
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = -1

Query: 333 YTNTPLIITEETYLEIKNKIKHNAPLKQFERFVYLPSKLLVNDII--GANTKAV--LTCL 166
           Y N PL +TEET+ ++ N  +    +K ++ F   PS   ++ ++     T AV  LT L
Sbjct: 424 YYNVPLCVTEETFTKLCNDHEVLTFIK-YKVFDAKPSAKTLSGLLEWECKTDAVEALTAL 482

Query: 165 RYNSKRC*NSSNP 127
            +   R  N SNP
Sbjct: 483 NHYQIRVPNGSNP 495


>AF461722-1|AAN76189.1|  537|Homo sapiens BLOCK24 variant protein.
          Length = 537

 Score = 29.9 bits (64), Expect = 9.7
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = -1

Query: 333 YTNTPLIITEETYLEIKNKIKHNAPLKQFERFVYLPSKLLVNDII--GANTKAV--LTCL 166
           Y N PL +TEET+ ++ N  +    +K ++ F   PS   ++ ++     T AV  LT L
Sbjct: 453 YYNVPLCVTEETFTKLCNDHEVLTFIK-YKVFDAKPSAKTLSGLLEWECKTDAVEALTAL 511

Query: 165 RYNSKRC*NSSNP 127
            +   R  N SNP
Sbjct: 512 NHYQIRVPNGSNP 524


>AC011247-1|AAY24302.1|  542|Homo sapiens unknown protein.
          Length = 542

 Score = 29.9 bits (64), Expect = 9.7
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = -1

Query: 333 YTNTPLIITEETYLEIKNKIKHNAPLKQFERFVYLPSKLLVNDII--GANTKAV--LTCL 166
           Y N PL +TEET+ ++ N  +    +K ++ F   PS   ++ ++     T AV  LT L
Sbjct: 458 YYNVPLCVTEETFTKLCNDHEVLTFIK-YKVFDAKPSAKTLSGLLEWECKTDAVEALTAL 516

Query: 165 RYNSKRC*NSSNP 127
            +   R  N SNP
Sbjct: 517 NHYQIRVPNGSNP 529


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,092,748
Number of Sequences: 237096
Number of extensions: 991113
Number of successful extensions: 1223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)