Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_F18
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   0.55 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.0  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 188 VFAPIISLTKSFDGR*TNLSNCFKGALCLILFLISKYVSSVII 316
           V  P+IS+     G+ T +   F G + LI+F ++KYV   ++
Sbjct: 124 VATPLISMGALL-GKTTYMQLVFMGIVELIMFTVNKYVGEHLL 165


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 574 ISWRFHRLLIRNGGTNKKNLFITM 503
           +S  F +LL       K+N FITM
Sbjct: 363 LSDNFQQLLFSKYDAKKRNFFITM 386


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 324 YSYMYSNLYSYC*HLFTYLIIWHNKII 404
           Y Y Y+N Y+Y  + +   + + N II
Sbjct: 96  YKYNYNNKYNYNNNNYNKKLYYKNYII 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,510
Number of Sequences: 438
Number of extensions: 2308
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)